Experiment ID: 1974

Field Description
namea single vibrionales 16s rrna oligotype dominates the intestinal microbiome in two geographically separated atlantic cod populations (6053498) - gpt-5
proj_id6053498
sraprjeb22384
date_of_upload10/12/2025 04:12
doi10.3389/fmicb.2018.01561
modelgpt-5
dbbact_id268
dbbact_linkhttps://dbbact.org/exp_info/268
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
intestinal mucosa0.666667
gadus morhua0.666667
LOWER IN gut content0.347826
mucosa0.330275
gut content0.327273
hindgut0.285714
kingdom of norway0.222222
LOWER IN mucosa0.193548
wild0.052632
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN gut content1.000000
intestinal mucosa0.500000
gadus morhua0.500000
LOWER IN mucosa0.250000
gut content0.250000
mucosa0.200000
hindgut0.166667
kingdom of norway0.125000
wild0.027027
Fraction of annotations for the query sequences containing the term
TermScore
hindgut1.000000
marine environment1.000000
intestinal mucosa1.000000
kingdom of norway1.000000
wild1.000000
gadus morhua1.000000
mucosa0.947368
lofoten islands0.578947
gut content0.473684
sørøya0.421053
LOWER IN gut content0.210526
LOWER IN mucosa0.157895
LOWER IN sørøya0.105263
LOWER IN lofoten islands0.105263
Number of experiments associating the term to the sequence
TermScore
lofoten islands1.000000
LOWER IN mucosa1.000000
LOWER IN sørøya1.000000
hindgut1.000000
marine environment1.000000
intestinal mucosa1.000000
gut content1.000000
kingdom of norway1.000000
wild1.000000
gadus morhua1.000000
mucosa1.000000
LOWER IN gut content1.000000
sørøya1.000000
LOWER IN lofoten islands1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1974gpt-5Gut content vs mucosal layer within Lofoten cod hindgut ( high in mucosa compared to gut content in hindgut marine environment intestinal mucosa kingdom of norway wild gadus morhua lofoten islands )2025-12-10v41 / 1pendingNo
1974gpt-5Lofoten mucosal layer (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, marine environment, intestinal mucosa, kingdom of norway, wild, mucosa, gadus morhua, lofoten islands)2025-12-10v41 / 7pendingNo
1974gpt-5Sørøya gut content (Atlantic cod hindgut, 16S amplicon) + Sørøya mucosal layer (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, marine environment, sørøya, intestinal mucosa, gut content, kingdom of norway, wild, mucosa, gadus morhua)2025-12-10v41 / 7pendingNo
1974gpt-5Lofoten gut content (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, marine environment, intestinal mucosa, gut content, kingdom of norway, wild, gadus morhua, lofoten islands)2025-12-10v41 / 8pendingNo
1974gpt-5Lofoten mixed gut+mucosa (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, marine environment, intestinal mucosa, kingdom of norway, wild, mucosa, gadus morhua, lofoten islands)2025-12-10v41 / 8pendingNo
1974gpt-5Sørøya mixed gut+mucosa (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, marine environment, sørøya, intestinal mucosa, kingdom of norway, wild, mucosa, gadus morhua)2025-12-10v41 / 10pendingNo
1974gpt-5Site effect on mucosal layer microbiome (Lofoten vs Sørøya) ( high in lofoten islands compared to sørøya gut content in hindgut marine environment intestinal mucosa kingdom of norway wild mucosa gadus morhua )2025-12-10v41 / 12pendingNo
1974gpt-5Tissue compartment effect using mixed vs separated prep within Lofoten ( high in gut content compared to mucosa in hindgut marine environment intestinal mucosa kingdom of norway wild mucosa gadus morhua lofoten islands )2025-12-10v41 / 14pendingNo
1974gpt-5Lofoten gut content (Atlantic cod hindgut, 16S amplicon) (common hindgut, marine environment, intestinal mucosa, gut content, kingdom of norway, wild, gadus morhua, lofoten islands)2025-12-10v41 / 16pendingNo
1974gpt-5Lofoten mixed gut+mucosa (Atlantic cod hindgut, 16S amplicon) (common hindgut, marine environment, intestinal mucosa, kingdom of norway, wild, mucosa, gadus morhua, lofoten islands)2025-12-10v41 / 16pendingNo
1974gpt-5Tissue compartment effect using mixed vs separated prep within Sørøya ( high in mucosa compared to gut content in hindgut marine environment sørøya intestinal mucosa kingdom of norway wild mucosa gadus morhua )2025-12-10v41 / 16pendingNo
1974gpt-5Lofoten mucosal layer (Atlantic cod hindgut, 16S amplicon) (common hindgut, marine environment, intestinal mucosa, kingdom of norway, wild, mucosa, gadus morhua, lofoten islands)2025-12-10v41 / 19pendingNo
1974gpt-5Sørøya mixed gut+mucosa (Atlantic cod hindgut, 16S amplicon) (common hindgut, marine environment, sørøya, intestinal mucosa, kingdom of norway, wild, mucosa, gadus morhua)2025-12-10v41 / 22pendingNo
1974gpt-5Sørøya gut content (Atlantic cod hindgut, 16S amplicon) + Sørøya mucosal layer (Atlantic cod hindgut, 16S amplicon) (common hindgut, marine environment, sørøya, intestinal mucosa, gut content, kingdom of norway, wild, mucosa, gadus morhua)2025-12-10v41 / 26pendingNo
1974gpt-5Site effect on mucosal layer microbiome (Lofoten vs Sørøya) ( high in sørøya gut content compared to lofoten islands in hindgut marine environment intestinal mucosa kingdom of norway wild mucosa gadus morhua )2025-12-10v41 / 33pendingNo
1974gpt-5Site effect on gut content microbiome (Lofoten vs Sørøya) ( high in mucosa sørøya compared to lofoten islands in hindgut marine environment intestinal mucosa gut content kingdom of norway wild gadus morhua )2025-12-10v41 / 43pendingNo
1974gpt-5Tissue compartment effect using mixed vs separated prep within Sørøya ( high in gut content compared to mucosa in hindgut marine environment sørøya intestinal mucosa kingdom of norway wild mucosa gadus morhua )2025-12-10v41 / 45pendingNo
1974gpt-5Tissue compartment effect using mixed vs separated prep within Lofoten ( high in mucosa compared to gut content in hindgut marine environment intestinal mucosa kingdom of norway wild mucosa gadus morhua lofoten islands )2025-12-10v41 / 52pendingNo
1974gpt-5Site effect on gut content microbiome (Lofoten vs Sørøya) ( high in lofoten islands compared to mucosa sørøya in hindgut marine environment intestinal mucosa gut content kingdom of norway wild gadus morhua )2025-12-10v41 / 67pendingNo

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