dbBact

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Experiment ID: 1968

Field	Description
name	uncoupling of mucosal gene regulation, mrna splicing and adherent microbiota signatures in inflammatory bowel disease (5749366) - gpt-5
proj_id	5749366
sra	prjeb14288
date_of_upload	10/12/2025 04:07
doi	10.1136/gutjnl-2016-311651
model	gpt-5
dbbact_id	714
dbbact_link	https://dbbact.org/exp_info/714
needs_manual_review	true

Annotations for experiment:

term enrichment score

Term	Score
sigmoid colon	0.400000
mucosa	0.333333
inflammatory bowel disease	0.200000
ileum	0.100000
ulcerative colitis	0.086957
crohn's disease	0.083333
germany	0.076923
human adult stage	0.045455
control	0.008850
homo sapiens	0.005168
feces	0.004577

Fraction of dbbact annotations with this term covered by the query

Term	Score
sigmoid colon	0.250000
mucosa	0.200000
inflammatory bowel disease	0.111111
ileum	0.052632
ulcerative colitis	0.045455
crohn's disease	0.043478
germany	0.040000
human adult stage	0.023256
control	0.004444
homo sapiens	0.002591
feces	0.002294

Fraction of annotations for the query sequences containing the term

Term	Score
non-ibd	1.000000
crohn's disease	1.000000
city of kiel	1.000000
homo sapiens	1.000000
germany	1.000000
control	1.000000
inflammatory bowel disease	1.000000
intestinal inflammation	1.000000
mucosa	1.000000
ulcerative colitis	1.000000
human adult stage	1.000000
ileum	1.000000
sigmoid colon	1.000000
feces	1.000000

Number of experiments associating the term to the sequence

Term	Score
non-ibd	1.000000
crohn's disease	1.000000
city of kiel	1.000000
homo sapiens	1.000000
germany	1.000000
control	1.000000
inflammatory bowel disease	1.000000
intestinal inflammation	1.000000
mucosa	1.000000
ulcerative colitis	1.000000
human adult stage	1.000000
ileum	1.000000
sigmoid colon	1.000000
feces	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1968	gpt-5	Terminal ileum mucosa-attached microbiota — Non-IBD disease controls + Terminal ileum mucosa-attached microbiota — Healthy controls + Terminal ileum mucosa-attached microbiota — Crohn's disease + Sigmoidal colon mucosa-attached microbiota — Healthy controls + Sigmoidal colon mucosa-attached microbiota — Non-IBD disease controls + Sigmoidal colon mucosa-attached microbiota — Ulcerative colitis (dominant non-ibd, crohn's disease, city of kiel, homo sapiens, germany, control, inflammatory bowel disease, intestinal inflammation, mucosa, ulcerative colitis, human adult stage, ileum, sigmoid colon, feces)	2025-12-10	v3	1 / 26	pending	No
1968	gpt-5	Terminal ileum mucosa-attached microbiota — Non-IBD disease controls + Terminal ileum mucosa-attached microbiota — Healthy controls + Terminal ileum mucosa-attached microbiota — Crohn's disease + Sigmoidal colon mucosa-attached microbiota — Healthy controls + Sigmoidal colon mucosa-attached microbiota — Non-IBD disease controls + Sigmoidal colon mucosa-attached microbiota — Ulcerative colitis (common non-ibd, crohn's disease, city of kiel, homo sapiens, germany, control, inflammatory bowel disease, intestinal inflammation, mucosa, ulcerative colitis, human adult stage, ileum, sigmoid colon, feces)	2025-12-10	v3	1 / 39	pending	No

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