Experiment ID: 1959

Field Description
namethe role of adaptive immunity as an ecological filter on the gut microbiota in zebrafish (5520148) - gpt-5
proj_id5520148
srasrp096739
date_of_upload10/12/2025 04:01
doi10.1038/ismej.2017.28
modelgpt-5
dbbact_id113
dbbact_linkhttps://dbbact.org/exp_info/113
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
wild type genotype0.363636
ig deficient0.363636
wild type0.266667
LOWER IN wild type0.250000
LOWER IN wild type genotype0.250000
LOWER IN ig deficient0.250000
aquarium0.200000
LOWER IN danio rerio0.181818
danio rerio0.160920
LOWER IN intestine0.117647
LOWER IN larval stage0.074074
larval stage0.052174
intestine0.032037
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN danio rerio1.000000
LOWER IN wild type0.333333
LOWER IN wild type genotype0.333333
LOWER IN ig deficient0.333333
wild type genotype0.333333
ig deficient0.333333
wild type0.200000
LOWER IN intestine0.142857
aquarium0.111111
danio rerio0.090909
LOWER IN larval stage0.058824
larval stage0.028571
intestine0.016393
united states of america0.001669
Exp. ID User ID Description Date Region Sequences Status Flag
1959gpt-5Adult wild-type zebrafish gut (75 dpf, Tubingen) + Adult rag1− zebrafish gut (75 dpf, rag1t26683/t26683) (common city of eugene, danio rerio, wild type, 75 days post fertilization, primary immunodeficiency disease, genotype, aquarium, tubingen strain, , united states of america, ig deficient, wild type genotype, intestine)2025-12-10v41 / 5pendingNo
1959gpt-5Host-associated gut microbiome vs environmental microbiome in adults (gut vs tank water) ( high in danio rerio wild type genotype tubingen strain primary immunodeficiency disease wild type genotype ig deficient intestine compared to in city of eugene 75 days post fertilization aquarium united states of america )2025-12-10v41 / 6pendingNo
1959gpt-5Adult wild-type zebrafish gut (75 dpf, Tubingen) + Adult rag1− zebrafish gut (75 dpf, rag1t26683/t26683) (dominant city of eugene, danio rerio, wild type, 75 days post fertilization, primary immunodeficiency disease, genotype, aquarium, tubingen strain, , united states of america, ig deficient, wild type genotype, intestine)2025-12-10v41 / 9pendingNo
1959gpt-5Larval zebrafish gut (9 dpf) (common city of eugene, danio rerio, united states of america, aquarium, , 9 days post fertilization, larval stage, intestine)2025-12-10v41 / 10pendingNo
1959gpt-5Larval zebrafish gut (9 dpf) (dominant city of eugene, danio rerio, united states of america, aquarium, , 9 days post fertilization, larval stage, intestine)2025-12-10v41 / 13pendingNo
1959gpt-5Adult tank water (75 dpf aquarium water) (dominant city of eugene, 75 days post fertilization, aquarium, , united states of america)2025-12-10v41 / 16pendingNo
1959gpt-5Adult tank water (75 dpf aquarium water) (common city of eugene, 75 days post fertilization, aquarium, , united states of america)2025-12-10v41 / 95pendingNo
1959gpt-5Developmental stage effect on gut microbiome (larval vs adult wild-type) ( high in wild type 75 days post fertilization genotype tubingen strain primary immunodeficiency disease wild type genotype ig deficient compared to larval stage 9 days post fertilization in city of eugene danio rerio aquarium united states of america intestine )2025-12-10v41 / 213pendingNo
1959gpt-5Host-associated gut microbiome vs environmental microbiome in adults (gut vs tank water) ( high in compared to danio rerio wild type genotype tubingen strain primary immunodeficiency disease wild type genotype ig deficient intestine in city of eugene 75 days post fertilization aquarium united states of america )2025-12-10v41 / 284pendingNo
1959gpt-5Developmental stage effect on gut microbiome (larval vs adult wild-type) ( high in larval stage 9 days post fertilization compared to wild type 75 days post fertilization genotype tubingen strain primary immunodeficiency disease wild type genotype ig deficient in city of eugene danio rerio aquarium united states of america intestine )2025-12-10v41 / 337pendingNo

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