Experiment ID: 1940

Field Description
namea single vibrionales 16s rrna oligotype dominates the intestinal microbiome in two geographically separated atlantic cod populations (6053498) - gpt-5
proj_id6053498
sraprjeb22384
date_of_upload10/12/2025 03:21
doi10.3389/fmicb.2018.01561
modelgpt-5
dbbact_id268
dbbact_linkhttps://dbbact.org/exp_info/268
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
intestinal mucosa0.666667
gadus morhua0.666667
marine biome0.666667
LOWER IN gut content0.421053
gut content0.352941
mucosa0.329412
hindgut0.285714
LOWER IN mucosa0.222222
kingdom of norway0.222222
wild0.052632
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN gut content1.000000
intestinal mucosa0.500000
gadus morhua0.500000
marine biome0.500000
gut content0.250000
LOWER IN mucosa0.250000
mucosa0.200000
hindgut0.166667
kingdom of norway0.125000
wild0.027027
Fraction of annotations for the query sequences containing the term
TermScore
hindgut1.000000
kingdom of norway1.000000
marine environment1.000000
intestinal mucosa1.000000
wild1.000000
gadus morhua1.000000
marine biome1.000000
mucosa0.933333
lofoten islands0.600000
gut content0.600000
sørøya0.400000
LOWER IN gut content0.266667
LOWER IN mucosa0.200000
LOWER IN lofoten islands0.133333
LOWER IN sørøya0.133333
Number of experiments associating the term to the sequence
TermScore
mucosa1.000000
LOWER IN gut content1.000000
hindgut1.000000
kingdom of norway1.000000
marine environment1.000000
intestinal mucosa1.000000
wild1.000000
lofoten islands1.000000
gadus morhua1.000000
marine biome1.000000
gut content1.000000
LOWER IN mucosa1.000000
sørøya1.000000
LOWER IN lofoten islands1.000000
LOWER IN sørøya1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1940gpt-5Gut content vs mucosal layer within Lofoten cod hindgut ( high in mucosa compared to gut content in hindgut kingdom of norway marine environment intestinal mucosa wild lofoten islands gadus morhua marine biome )2025-12-10v41 / 1pendingNo
1940gpt-5Lofoten mucosal layer (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, kingdom of norway, mucosa, marine environment, intestinal mucosa, wild, lofoten islands, gadus morhua, marine biome)2025-12-10v41 / 7pendingNo
1940gpt-5Sørøya mucosal layer (Atlantic cod hindgut, 16S amplicon) + Sørøya gut content (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, kingdom of norway, mucosa, marine environment, sørøya, gut content, intestinal mucosa, wild, gadus morhua, marine biome)2025-12-10v41 / 7pendingNo
1940gpt-5Lofoten gut content (Atlantic cod hindgut, 16S amplicon) (dominant hindgut, kingdom of norway, marine environment, gut content, intestinal mucosa, wild, lofoten islands, gadus morhua, marine biome)2025-12-10v41 / 8pendingNo
1940gpt-5Site effect on mucosal layer microbiome (Lofoten vs Sørøya) ( high in lofoten islands compared to sørøya gut content in hindgut kingdom of norway mucosa marine environment intestinal mucosa wild gadus morhua marine biome )2025-12-10v41 / 9pendingNo
1940gpt-5Tissue compartment effect using mixed vs separated prep within Lofoten ( high in gut content compared to mucosa in hindgut kingdom of norway mucosa marine environment intestinal mucosa wild lofoten islands gadus morhua marine biome )2025-12-10v41 / 14pendingNo
1940gpt-5Lofoten gut content (Atlantic cod hindgut, 16S amplicon) (common hindgut, kingdom of norway, marine environment, gut content, intestinal mucosa, wild, lofoten islands, gadus morhua, marine biome)2025-12-10v41 / 16pendingNo
1940gpt-5Site effect on gut content microbiome (Lofoten vs Sørøya) ( high in lofoten islands compared to mucosa sørøya in hindgut kingdom of norway marine environment gut content intestinal mucosa wild gadus morhua marine biome )2025-12-10v41 / 18pendingNo
1940gpt-5Lofoten mucosal layer (Atlantic cod hindgut, 16S amplicon) (common hindgut, kingdom of norway, mucosa, marine environment, intestinal mucosa, wild, lofoten islands, gadus morhua, marine biome)2025-12-10v41 / 19pendingNo
1940gpt-5Tissue compartment effect using mixed vs separated prep within Sørøya ( high in mucosa compared to gut content in hindgut kingdom of norway mucosa marine environment sørøya intestinal mucosa wild gadus morhua marine biome )2025-12-10v41 / 20pendingNo
1940gpt-5Site effect on mucosal layer microbiome (Lofoten vs Sørøya) ( high in sørøya gut content compared to lofoten islands in hindgut kingdom of norway mucosa marine environment intestinal mucosa wild gadus morhua marine biome )2025-12-10v41 / 21pendingNo
1940gpt-5Sørøya mucosal layer (Atlantic cod hindgut, 16S amplicon) + Sørøya gut content (Atlantic cod hindgut, 16S amplicon) (common hindgut, kingdom of norway, mucosa, marine environment, sørøya, gut content, intestinal mucosa, wild, gadus morhua, marine biome)2025-12-10v41 / 26pendingNo
1940gpt-5Site effect on gut content microbiome (Lofoten vs Sørøya) ( high in mucosa sørøya compared to lofoten islands in hindgut kingdom of norway marine environment gut content intestinal mucosa wild gadus morhua marine biome )2025-12-10v41 / 31pendingNo
1940gpt-5Tissue compartment effect using mixed vs separated prep within Sørøya ( high in gut content compared to mucosa in hindgut kingdom of norway mucosa marine environment sørøya intestinal mucosa wild gadus morhua marine biome )2025-12-10v41 / 47pendingNo
1940gpt-5Tissue compartment effect using mixed vs separated prep within Lofoten ( high in mucosa compared to gut content in hindgut kingdom of norway mucosa marine environment intestinal mucosa wild lofoten islands gadus morhua marine biome )2025-12-10v41 / 53pendingNo

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