Experiment ID: 1927

Field Description
namethe role of adaptive immunity as an ecological filter on the gut microbiota in zebrafish (5520148) - gpt-5
proj_id5520148
srasrp096739
date_of_upload10/12/2025 02:49
doi10.1038/ismej.2017.28
modelgpt-5
dbbact_id113
dbbact_linkhttps://dbbact.org/exp_info/113
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
fresh water aquarium0.666667
ig deficient0.444444
wild type0.363636
aquarium0.333333
LOWER IN ig deficient0.285714
LOWER IN wild type0.285714
danio rerio0.269231
LOWER IN danio rerio0.181818
LOWER IN intestine0.142857
LOWER IN larval stage0.105263
larval stage0.093750
intestine0.061674
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN danio rerio1.000000
LOWER IN ig deficient0.500000
LOWER IN wild type0.500000
fresh water aquarium0.500000
ig deficient0.500000
wild type0.333333
LOWER IN intestine0.250000
aquarium0.200000
danio rerio0.166667
LOWER IN larval stage0.111111
larval stage0.055556
intestine0.032258
united states of america0.003333
Exp. ID User ID Description Date Region Sequences Status Flag
1927gpt-5Adult wild-type zebrafish gut (75 dpf, Tubingen) + Adult rag1− zebrafish gut (75 dpf, rag1t26683/t26683) (common ig deficient, united states of america, wild type, rag1t26683/t26683 genotype, city of eugene, , tubingen strain, aquarium, fresh water aquarium, immunodeficient, danio rerio, 75 days post fertilization, intestine)2025-12-10v41 / 5pendingNo
1927gpt-5Host-associated gut microbiome vs environmental microbiome in adults (gut vs tank water) ( high in ig deficient wild type rag1t26683/t26683 genotype tubingen strain immunodeficient danio rerio intestine compared to in united states of america city of eugene aquarium fresh water aquarium 75 days post fertilization )2025-12-10v41 / 6pendingNo
1927gpt-5Adult wild-type zebrafish gut (75 dpf, Tubingen) + Adult rag1− zebrafish gut (75 dpf, rag1t26683/t26683) (dominant ig deficient, united states of america, wild type, rag1t26683/t26683 genotype, city of eugene, , tubingen strain, aquarium, fresh water aquarium, immunodeficient, danio rerio, 75 days post fertilization, intestine)2025-12-10v41 / 9pendingNo
1927gpt-5Larval zebrafish gut (9 dpf) (common , united states of america, 9 days post fertilization, city of eugene, aquarium, fresh water aquarium, larval stage, danio rerio, intestine)2025-12-10v41 / 10pendingNo
1927gpt-5Larval zebrafish gut (9 dpf) (dominant , united states of america, 9 days post fertilization, city of eugene, aquarium, fresh water aquarium, larval stage, danio rerio, intestine)2025-12-10v41 / 13pendingNo
1927gpt-5Adult tank water (75 dpf aquarium water) (dominant , united states of america, city of eugene, aquarium, fresh water aquarium, 75 days post fertilization)2025-12-10v41 / 16pendingNo
1927gpt-5Adult tank water (75 dpf aquarium water) (common , united states of america, city of eugene, aquarium, fresh water aquarium, 75 days post fertilization)2025-12-10v41 / 95pendingNo
1927gpt-5Developmental stage effect on gut microbiome (larval vs adult wild-type) ( high in ig deficient wild type rag1t26683/t26683 genotype tubingen strain immunodeficient 75 days post fertilization compared to larval stage 9 days post fertilization in united states of america city of eugene aquarium fresh water aquarium danio rerio intestine )2025-12-10v41 / 204pendingNo
1927gpt-5Host-associated gut microbiome vs environmental microbiome in adults (gut vs tank water) ( high in compared to ig deficient wild type rag1t26683/t26683 genotype tubingen strain immunodeficient danio rerio intestine in united states of america city of eugene aquarium fresh water aquarium 75 days post fertilization )2025-12-10v41 / 281pendingNo
1927gpt-5Developmental stage effect on gut microbiome (larval vs adult wild-type) ( high in larval stage 9 days post fertilization compared to ig deficient wild type rag1t26683/t26683 genotype tubingen strain immunodeficient 75 days post fertilization in united states of america city of eugene aquarium fresh water aquarium danio rerio intestine )2025-12-10v41 / 328pendingNo

Problems / suggestions? Please visit the dbBact forum