Experiment ID: 1923

Field Description
nameparkinson’s disease and pd medications have distinct signatures of the gut microbiome (5469442) - gpt-5
proj_id5469442
sraerp016332
date_of_upload10/12/2025 02:42
doi10.1002/mds.26942
modelgpt-5
dbbact_id591
dbbact_linkhttps://dbbact.org/exp_info/591
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
seattle0.666667
parkinson's disease0.311111
LOWER IN parkinson's disease0.142857
human adult stage0.045455
control0.008759
LOWER IN control0.008696
united states of america0.006645
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
seattle0.500000
LOWER IN parkinson's disease0.250000
parkinson's disease0.200000
human adult stage0.023256
LOWER IN control0.004545
control0.004444
united states of america0.003333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
seattle1.000000
city of atlanta1.000000
human adult stage1.000000
human house1.000000
united states of america1.000000
city of albany1.000000
parkinson's disease0.700000
treatment0.400000
control0.300000
benztropine0.200000
clinical treatment protocol0.200000
trihexyphenidyl0.200000
opicapone0.200000
no comt inhibitor0.200000
levodopa0.200000
carbidopa0.200000
entacapone0.200000
tolcapone0.200000
LOWER IN parkinson's disease0.100000
LOWER IN control0.100000
Number of experiments associating the term to the sequence
TermScore
feces1.000000
benztropine1.000000
homo sapiens1.000000
seattle1.000000
city of atlanta1.000000
human adult stage1.000000
human house1.000000
united states of america1.000000
treatment1.000000
parkinson's disease1.000000
clinical treatment protocol1.000000
trihexyphenidyl1.000000
city of albany1.000000
control1.000000
opicapone1.000000
no comt inhibitor1.000000
levodopa1.000000
carbidopa1.000000
entacapone1.000000
tolcapone1.000000
LOWER IN parkinson's disease1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1923gpt-5Control human stool samples (dominant feces, homo sapiens, city of atlanta, human adult stage, human house, control, united states of america, seattle, city of albany)2025-12-10v41 / 17pendingNo
1923gpt-5Parkinson's disease vs controls (stool microbiome differences) ( high in parkinson's disease compared to control in feces homo sapiens city of atlanta human adult stage human house united states of america seattle city of albany )2025-12-10v41 / 17pendingNo
1923gpt-5PD patients on anticholinergics (stool) (dominant feces, benztropine, homo sapiens, seattle, city of atlanta, human adult stage, human house, united states of america, treatment, parkinson's disease, clinical treatment protocol, trihexyphenidyl, city of albany)2025-12-10v41 / 20pendingNo
1923gpt-5Parkinson's disease human stool samples (dominant feces, homo sapiens, city of atlanta, human adult stage, human house, united states of america, parkinson's disease, seattle, city of albany)2025-12-10v41 / 21pendingNo
1923gpt-5PD patients not on COMT inhibitor (stool) + PD patients on COMT inhibitor (stool) + PD patients on carbidopa/levodopa (stool) (dominant opicapone, homo sapiens, feces, no comt inhibitor, city of atlanta, levodopa, human adult stage, human house, carbidopa, entacapone, united states of america, treatment, parkinson's disease, seattle, city of albany, tolcapone)2025-12-10v41 / 21pendingNo
1923gpt-5Parkinson's disease vs controls (stool microbiome differences) ( high in control compared to parkinson's disease in feces homo sapiens city of atlanta human adult stage human house united states of america seattle city of albany )2025-12-10v41 / 30pendingNo
1923gpt-5PD patients not on COMT inhibitor (stool) + PD patients on COMT inhibitor (stool) + PD patients on carbidopa/levodopa (stool) (common opicapone, homo sapiens, feces, no comt inhibitor, city of atlanta, levodopa, human adult stage, human house, carbidopa, entacapone, united states of america, treatment, parkinson's disease, seattle, city of albany, tolcapone)2025-12-10v41 / 44pendingNo
1923gpt-5Parkinson's disease human stool samples (common feces, homo sapiens, city of atlanta, human adult stage, human house, united states of america, parkinson's disease, seattle, city of albany)2025-12-10v41 / 47pendingNo
1923gpt-5Control human stool samples (common feces, homo sapiens, city of atlanta, human adult stage, human house, control, united states of america, seattle, city of albany)2025-12-10v41 / 56pendingNo
1923gpt-5PD patients on anticholinergics (stool) (common feces, benztropine, homo sapiens, seattle, city of atlanta, human adult stage, human house, united states of america, treatment, parkinson's disease, clinical treatment protocol, trihexyphenidyl, city of albany)2025-12-10v41 / 107pendingNo

Problems / suggestions? Please visit the dbBact forum