dbBact

This is the development server

Experiment ID: 191

Field	Description
name	replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of us women
sra	srp115697
datamd5	ddb46343d3660a8f1a9612e08179be81
mapmd5	d7390ec6ece3c4f00f361584739a444c

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN premature birth	0.250000
premature birth	0.250000
last trimerster	0.250000
LOWER IN first trimester pregnancy stage	0.250000
LOWER IN last trimester	0.250000
first trimester pregnancy stage	0.200000
pregnancy	0.125000
vagina	0.117647
female	0.024691
LOWER IN control	0.008850
control	0.008658
united states of america	0.006645
homo sapiens	0.005168

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN premature birth	0.500000
premature birth	0.500000
last trimerster	0.500000
LOWER IN first trimester pregnancy stage	0.500000
LOWER IN last trimester	0.500000
first trimester pregnancy stage	0.250000
pregnancy	0.066667
vagina	0.062500
female	0.012500
LOWER IN control	0.004545
control	0.004444
united states of america	0.003333
homo sapiens	0.002591

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
united states of america	1.000000
female	1.000000
pregnancy	1.000000
vagina	1.000000
control	0.166667
LOWER IN premature birth	0.166667
premature birth	0.166667
LOWER IN control	0.166667
last trimerster	0.166667
LOWER IN first trimester pregnancy stage	0.166667
first trimester pregnancy stage	0.166667
LOWER IN last trimester	0.166667

Number of experiments associating the term to the sequence

Term	Score
control	1.000000
LOWER IN premature birth	1.000000
homo sapiens	1.000000
united states of america	1.000000
female	1.000000
pregnancy	1.000000
vagina	1.000000
premature birth	1.000000
LOWER IN control	1.000000
last trimerster	1.000000
LOWER IN first trimester pregnancy stage	1.000000
first trimester pregnancy stage	1.000000
LOWER IN last trimester	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
191	amnon	decreases during pregnancy ( high in first trimester pregnancy stage compared to last trimester in homo sapiens united states of america female pregnancy vagina )	2017-09-05	v4	1 / 3	approved	No
191	amnon	increases during pregnancy ( high in last trimerster compared to first trimester pregnancy stage in homo sapiens united states of america female pregnancy vagina )	2017-09-05	v4	1 / 7	approved	No
191	amnon	dominant homo sapiens, united states of america, female, pregnancy, vagina	2017-09-05	v4	1 / 11	approved	No
191	amnon	higher in preterm birth vaginal samples ( high in premature birth compared to control in homo sapiens united states of america female pregnancy vagina )	2017-09-05	v4	1 / 22	approved	No
191	amnon	common homo sapiens, united states of america, female, pregnancy, vagina	2017-09-05	v4	1 / 31	approved	No
191	amnon	lower in preterm birth vaginal samples ( high in control compared to premature birth in homo sapiens united states of america female pregnancy vagina )	2017-09-05	v4	1 / 37	approved	No

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