dbBact

This is the development server

Experiment ID: 191

Field	Description
name	replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of us women
sra	srp115697
datamd5	ddb46343d3660a8f1a9612e08179be81
mapmd5	d7390ec6ece3c4f00f361584739a444c

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN premature birth	0.222222
premature birth	0.222222
last trimerster	0.222222
LOWER IN first trimester pregnancy stage	0.222222
LOWER IN last trimester	0.222222
first trimester pregnancy stage	0.153846
pregnancy	0.066667
vagina	0.062500
female	0.012500
LOWER IN control	0.004494
control	0.004396
united states of america	0.003333
homo sapiens	0.002591

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN premature birth	0.333333
premature birth	0.333333
last trimerster	0.333333
LOWER IN first trimester pregnancy stage	0.333333
LOWER IN last trimester	0.333333
first trimester pregnancy stage	0.142857
pregnancy	0.034483
vagina	0.032258
female	0.006289
LOWER IN control	0.002278
control	0.002227
united states of america	0.001669
homo sapiens	0.001297

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
vagina	1.000000
female	1.000000
united states of america	1.000000
pregnancy	1.000000
control	0.166667
LOWER IN premature birth	0.166667
premature birth	0.166667
LOWER IN control	0.166667
last trimerster	0.166667
LOWER IN first trimester pregnancy stage	0.166667
first trimester pregnancy stage	0.166667
LOWER IN last trimester	0.166667

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
vagina	1.000000
female	1.000000
united states of america	1.000000
pregnancy	1.000000
control	1.000000
LOWER IN premature birth	1.000000
premature birth	1.000000
LOWER IN control	1.000000
last trimerster	1.000000
LOWER IN first trimester pregnancy stage	1.000000
first trimester pregnancy stage	1.000000
LOWER IN last trimester	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
191	amnon	decreases during pregnancy ( high in first trimester pregnancy stage compared to last trimester in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	1 / 3	approved	No
191	amnon	increases during pregnancy ( high in last trimerster compared to first trimester pregnancy stage in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	1 / 7	approved	No
191	amnon	dominant homo sapiens, vagina, female, united states of america, pregnancy	2017-09-05	v4	1 / 11	approved	No
191	amnon	higher in preterm birth vaginal samples ( high in premature birth compared to control in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	1 / 22	approved	No
191	amnon	common homo sapiens, vagina, female, united states of america, pregnancy	2017-09-05	v4	1 / 31	approved	No
191	amnon	lower in preterm birth vaginal samples ( high in control compared to premature birth in homo sapiens vagina female united states of america pregnancy )	2017-09-05	v4	1 / 37	approved	No

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