dbBact

This is the development server

Experiment ID: 190

Field	Description
name	seasonal cycling in the gut microbiome of the hadza hunter-gatherers of tanzania
sra	srp110600
sra	prjna392012
datamd5	c2fbf2920f6118ed26be311db0cb9198
mapmd5	dd130712d3286061ff343048e08beaf8

Annotations for experiment:

term enrichment score

Term	Score
hadza	0.500000
tanzania	0.285714
hunter gatherer	0.285714
camp hukamako	0.250000
LOWER IN camp sengeli	0.250000
camp sengeli	0.250000
LOWER IN camp hukamako	0.250000
wet season	0.166667
LOWER IN dry season	0.166667
dry season	0.166667
LOWER IN wet season	0.166667
homo sapiens	0.005168
feces	0.004577

Fraction of dbbact annotations with this term covered by the query

Term	Score
camp hukamako	0.500000
LOWER IN camp sengeli	0.500000
camp sengeli	0.500000
LOWER IN camp hukamako	0.500000
hadza	0.333333
wet season	0.166667
LOWER IN dry season	0.166667
tanzania	0.166667
hunter gatherer	0.166667
dry season	0.166667
LOWER IN wet season	0.166667
homo sapiens	0.002591
feces	0.002294

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
tanzania	1.000000
hunter gatherer	1.000000
hadza	1.000000
wet season	0.166667
LOWER IN dry season	0.166667
dry season	0.166667
LOWER IN wet season	0.166667
camp hukamako	0.166667
LOWER IN camp sengeli	0.166667
camp sengeli	0.166667
LOWER IN camp hukamako	0.166667

Number of experiments associating the term to the sequence

Term	Score
wet season	1.000000
LOWER IN dry season	1.000000
feces	1.000000
homo sapiens	1.000000
tanzania	1.000000
hunter gatherer	1.000000
hadza	1.000000
dry season	1.000000
LOWER IN wet season	1.000000
camp hukamako	1.000000
LOWER IN camp sengeli	1.000000
camp sengeli	1.000000
LOWER IN camp hukamako	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
190	amnon	dominant feces, homo sapiens, tanzania, hunter gatherer, hadza	2017-09-04	v4	1 / 14	approved	No
190	amnon	lower in Hadza camp Hukamako compared to hadza camp Sengeli ( high in camp sengeli compared to camp hukamako in feces homo sapiens tanzania hunter gatherer hadza )	2017-09-04	v4	1 / 20	approved	No
190	amnon	higher in Hadza camp Hukamako compared to hadza camp Sengeli ( high in camp hukamako compared to camp sengeli in feces homo sapiens tanzania hunter gatherer hadza )	2017-09-04	v4	1 / 35	approved	No
190	amnon	common feces, homo sapiens, tanzania, hunter gatherer, hadza	2017-09-04	v4	1 / 169	approved	No
190	amnon	high in dry season compared to wet season in feces homo sapiens tanzania hunter gatherer hadza	2017-09-04	v4	1 / 311	approved	No
190	amnon	high in wet season compared to dry season in feces homo sapiens tanzania hunter gatherer hadza	2017-09-04	v4	1 / 341	approved	No

Problems / suggestions? Please visit the dbBact forum