Experiment ID: 1864

Field Description
nameincreasing dietary fiber intake is associated with a distinct esophageal microbiome (6200756) - gpt-5
proj_id6200756
srasrp141237
date_of_upload17/11/2025 01:35
doi10.1038/s41424-018-0067-7
modelgpt-5
dbbact_id690
dbbact_linkhttps://dbbact.org/exp_info/690
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
oesophageal brush0.666667
human middle aged stage0.400000
esophagus0.400000
human aged stage0.400000
state of new york0.133333
male organism0.111111
united states of america0.006645
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
oesophageal brush0.500000
human middle aged stage0.250000
esophagus0.250000
human aged stage0.250000
state of new york0.071429
male organism0.058824
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
ambulatory patient1.000000
proton pump inhibitor use1.000000
human middle aged stage1.000000
esophagus1.000000
male organism1.000000
human aged stage1.000000
united states of america1.000000
homo sapiens1.000000
oesophageal brush1.000000
esophagus squamous epithelium1.000000
endoscopy1.000000
state of new york1.000000
illumina miseq0.333333
illumina hiseq 25000.333333
LOWER IN illumina hiseq 25000.166667
LOWER IN illumina miseq0.166667
Number of experiments associating the term to the sequence
TermScore
ambulatory patient1.000000
proton pump inhibitor use1.000000
human middle aged stage1.000000
esophagus1.000000
male organism1.000000
human aged stage1.000000
united states of america1.000000
illumina miseq1.000000
homo sapiens1.000000
oesophageal brush1.000000
esophagus squamous epithelium1.000000
endoscopy1.000000
state of new york1.000000
illumina hiseq 25001.000000
LOWER IN illumina hiseq 25001.000000
LOWER IN illumina miseq1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1864gpt-5Sequencing platform effect in human esophageal squamous brushings (HiSeq 2500 vs MiSeq) ( high in illumina hiseq 2500 compared to illumina miseq in ambulatory patient proton pump inhibitor use human middle aged stage esophagus male organism human aged stage united states of america homo sapiens oesophageal brush esophagus squamous epithelium endoscopy state of new york )2025-11-17v41 / 1pendingNo
1864gpt-5Platform-specific subsets vs overall esophageal brushing cohort (assess representativeness) ( high in illumina hiseq 2500 compared to in ambulatory patient proton pump inhibitor use human middle aged stage esophagus male organism human aged stage united states of america homo sapiens oesophageal brush esophagus squamous epithelium endoscopy state of new york )2025-11-17v41 / 1pendingNo
1864gpt-5MiSeq subset vs overall esophageal brushing cohort (assess representativeness) ( high in compared to illumina miseq in ambulatory patient proton pump inhibitor use human middle aged stage esophagus male organism human aged stage united states of america homo sapiens oesophageal brush esophagus squamous epithelium endoscopy state of new york )2025-11-17v41 / 1pendingNo
1864gpt-5Sequencing platform effect in human esophageal squamous brushings (HiSeq 2500 vs MiSeq) ( high in illumina miseq compared to illumina hiseq 2500 in ambulatory patient proton pump inhibitor use human middle aged stage esophagus male organism human aged stage united states of america homo sapiens oesophageal brush esophagus squamous epithelium endoscopy state of new york )2025-11-17v41 / 8pendingNo
1864gpt-5Platform-specific subsets vs overall esophageal brushing cohort (assess representativeness) ( high in compared to illumina hiseq 2500 in ambulatory patient proton pump inhibitor use human middle aged stage esophagus male organism human aged stage united states of america homo sapiens oesophageal brush esophagus squamous epithelium endoscopy state of new york )2025-11-17v41 / 13pendingNo
1864gpt-5MiSeq subset vs overall esophageal brushing cohort (assess representativeness) ( high in illumina miseq compared to in ambulatory patient proton pump inhibitor use human middle aged stage esophagus male organism human aged stage united states of america homo sapiens oesophageal brush esophagus squamous epithelium endoscopy state of new york )2025-11-17v41 / 14pendingNo
1864gpt-5Human esophageal squamous brushings (dominant ambulatory patient, proton pump inhibitor use, human middle aged stage, esophagus, male organism, human aged stage, united states of america, homo sapiens, oesophageal brush, esophagus squamous epithelium, endoscopy, state of new york)2025-11-17v41 / 15pendingNo
1864gpt-5HiSeq 2500 runs (esophageal brushings) (dominant ambulatory patient, proton pump inhibitor use, human middle aged stage, esophagus, male organism, human aged stage, united states of america, illumina hiseq 2500, homo sapiens, oesophageal brush, esophagus squamous epithelium, endoscopy, state of new york)2025-11-17v41 / 15pendingNo
1864gpt-5MiSeq runs (esophageal brushings) (dominant ambulatory patient, proton pump inhibitor use, human middle aged stage, esophagus, male organism, human aged stage, united states of america, illumina miseq, homo sapiens, oesophageal brush, esophagus squamous epithelium, endoscopy, state of new york)2025-11-17v41 / 21pendingNo
1864gpt-5HiSeq 2500 runs (esophageal brushings) (common ambulatory patient, proton pump inhibitor use, human middle aged stage, esophagus, male organism, human aged stage, united states of america, illumina hiseq 2500, homo sapiens, oesophageal brush, esophagus squamous epithelium, endoscopy, state of new york)2025-11-17v41 / 61pendingNo
1864gpt-5Human esophageal squamous brushings (common ambulatory patient, proton pump inhibitor use, human middle aged stage, esophagus, male organism, human aged stage, united states of america, homo sapiens, oesophageal brush, esophagus squamous epithelium, endoscopy, state of new york)2025-11-17v41 / 68pendingNo
1864gpt-5MiSeq runs (esophageal brushings) (common ambulatory patient, proton pump inhibitor use, human middle aged stage, esophagus, male organism, human aged stage, united states of america, illumina miseq, homo sapiens, oesophageal brush, esophagus squamous epithelium, endoscopy, state of new york)2025-11-17v41 / 87pendingNo

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