Experiment ID: 1857

Field Description
namethe association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in fiji (6636143) - gpt-5
proj_id6636143
sraprjna493513
date_of_upload15/11/2025 20:10
doi10.1186/s40168-019-0716-4
modelgpt-5
dbbact_id533
dbbact_linkhttps://dbbact.org/exp_info/533
needs_manual_reviewfalse

Annotations for experiment:

term enrichment score
TermScore
fiji0.500000
infant stage0.303030
LOWER IN homo sapiens0.181818
LOWER IN infant stage0.153846
LOWER IN nasopharynx0.153846
12-month-old human stage0.120482
LOWER IN 12-month-old human stage0.105263
nasopharynx0.088496
LOWER IN control0.004474
control0.004428
homo sapiens0.002589
Fraction of dbbact annotations with this term covered by the query
TermScore
fiji0.333333
LOWER IN homo sapiens0.333333
infant stage0.200000
LOWER IN infant stage0.200000
LOWER IN nasopharynx0.200000
LOWER IN 12-month-old human stage0.090909
12-month-old human stage0.066667
nasopharynx0.047619
LOWER IN control0.002278
control0.002227
homo sapiens0.001297
Fraction of annotations for the query sequences containing the term
TermScore
suva1.000000
fiji1.000000
infant stage0.625000
homo sapiens0.625000
nasopharyngeal swab0.625000
12-month-old human stage0.625000
nasopharynx0.625000
control0.375000
laboratory negative control0.375000
no recent antibiotic use0.250000
LOWER IN homo sapiens0.125000
LOWER IN infant stage0.125000
LOWER IN nasopharyngeal swab0.125000
LOWER IN 12-month-old human stage0.125000
LOWER IN nasopharynx0.125000
LOWER IN control0.125000
LOWER IN laboratory negative control0.125000
Number of experiments associating the term to the sequence
TermScore
control1.000000
laboratory negative control1.000000
suva1.000000
fiji1.000000
infant stage1.000000
homo sapiens1.000000
nasopharyngeal swab1.000000
12-month-old human stage1.000000
nasopharynx1.000000
no recent antibiotic use1.000000
LOWER IN homo sapiens1.000000
LOWER IN infant stage1.000000
LOWER IN nasopharyngeal swab1.000000
LOWER IN 12-month-old human stage1.000000
LOWER IN nasopharynx1.000000
LOWER IN control1.000000
LOWER IN laboratory negative control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1857gpt-5Quality control: study samples vs non-biological negative controls ( high in homo sapiens infant stage nasopharyngeal swab 12-month-old human stage nasopharynx compared to control laboratory negative control in suva fiji )2025-11-15v41 / 3pendingNo
1857gpt-5Quality control: study samples vs non-biological negative controls ( high in control laboratory negative control compared to homo sapiens infant stage nasopharyngeal swab 12-month-old human stage nasopharynx in suva fiji )2025-11-15v41 / 10pendingNo
1857gpt-5All nasopharyngeal swabs from Fijian children (study samples) (dominant suva, infant stage, homo sapiens, nasopharyngeal swab, 12-month-old human stage, nasopharynx, fiji)2025-11-15v41 / 14pendingNo
1857gpt-5No recent antibiotic use (past 2 weeks) (dominant suva, infant stage, homo sapiens, no recent antibiotic use, nasopharyngeal swab, 12-month-old human stage, nasopharynx, fiji)2025-11-15v41 / 14pendingNo
1857gpt-5Negative controls (non-biological) (dominant control, laboratory negative control, suva, fiji)2025-11-15v41 / 17pendingNo
1857gpt-5All nasopharyngeal swabs from Fijian children (study samples) (common suva, infant stage, homo sapiens, nasopharyngeal swab, 12-month-old human stage, nasopharynx, fiji)2025-11-15v41 / 19pendingNo
1857gpt-5No recent antibiotic use (past 2 weeks) (common suva, infant stage, homo sapiens, no recent antibiotic use, nasopharyngeal swab, 12-month-old human stage, nasopharynx, fiji)2025-11-15v41 / 19pendingNo
1857gpt-5Negative controls (non-biological) (common control, laboratory negative control, suva, fiji)2025-11-15v41 / 25pendingNo

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