Experiment ID: 1850

Field Description
nameimpact of demographics on human gut microbial diversity in a us midwest population (4734456) - gpt-5
proj_id4734456
sraprjna297510
date_of_upload15/11/2025 17:15
doi10.7717/peerj.1514
modelgpt-5
dbbact_id745
dbbact_linkhttps://dbbact.org/exp_info/745
needs_manual_reviewfalse

Annotations for experiment:

term enrichment score
TermScore
male organism0.095238
female organism0.086957
colon0.083333
human adult stage0.045455
united states of america0.006645
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
male organism0.058824
female organism0.052632
colon0.043478
human adult stage0.023256
united states of america0.003333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
colon1.000000
homo sapiens1.000000
human adult stage1.000000
community dwelling1.000000
midwestern reference panel1.000000
united states of america1.000000
feces1.000000
2014-01-03 collection batch0.375000
2015-02-27 collection batch0.375000
female organism0.250000
male organism0.250000
LOWER IN 2015-02-27 collection batch0.125000
LOWER IN 2014-01-03 collection batch0.125000
Number of experiments associating the term to the sequence
TermScore
2014-01-03 collection batch1.000000
colon1.000000
homo sapiens1.000000
human adult stage1.000000
community dwelling1.000000
midwestern reference panel1.000000
united states of america1.000000
feces1.000000
2015-02-27 collection batch1.000000
female organism1.000000
male organism1.000000
LOWER IN 2015-02-27 collection batch1.000000
LOWER IN 2014-01-03 collection batch1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1850gpt-5Batch 1 (2014-01-03 collection) Midwestern stool samples (dominant 2014-01-03 collection batch, colon, homo sapiens, human adult stage, community dwelling, midwestern reference panel, united states of america, feces)2025-11-15v31 / 20pendingNo
1850gpt-5Batch 2 (2015-02-27 collection) Midwestern stool samples (dominant colon, homo sapiens, human adult stage, community dwelling, midwestern reference panel, united states of america, 2015-02-27 collection batch, feces)2025-11-15v31 / 21pendingNo
1850gpt-5Assess potential batch effects between collection dates (2014 vs 2015, Midwestern stool) ( high in 2015-02-27 collection batch compared to 2014-01-03 collection batch in colon homo sapiens human adult stage community dwelling midwestern reference panel united states of america feces )2025-11-15v31 / 21pendingNo
1850gpt-5Male Midwestern adult stool samples + Female Midwestern adult stool samples (dominant female organism, colon, homo sapiens, human adult stage, community dwelling, male organism, midwestern reference panel, united states of america, feces)2025-11-15v31 / 24pendingNo
1850gpt-5Assess potential batch effects between collection dates (2014 vs 2015, Midwestern stool) ( high in 2014-01-03 collection batch compared to 2015-02-27 collection batch in colon homo sapiens human adult stage community dwelling midwestern reference panel united states of america feces )2025-11-15v31 / 32pendingNo
1850gpt-5Male Midwestern adult stool samples + Female Midwestern adult stool samples (common female organism, colon, homo sapiens, human adult stage, community dwelling, male organism, midwestern reference panel, united states of america, feces)2025-11-15v31 / 55pendingNo
1850gpt-5Batch 2 (2015-02-27 collection) Midwestern stool samples (common colon, homo sapiens, human adult stage, community dwelling, midwestern reference panel, united states of america, 2015-02-27 collection batch, feces)2025-11-15v31 / 57pendingNo
1850gpt-5Batch 1 (2014-01-03 collection) Midwestern stool samples (common 2014-01-03 collection batch, colon, homo sapiens, human adult stage, community dwelling, midwestern reference panel, united states of america, feces)2025-11-15v31 / 59pendingNo

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