Experiment ID: 1849

Field Description
nameinvestigating colonization of the healthy adult gastrointestinal tract by fungi (5874442) - gpt-5
proj_id5874442
sraprjna379437
date_of_upload15/11/2025 17:05
doi10.1128/msphere.00092-18
modelgpt-5
dbbact_id319
dbbact_linkhttps://dbbact.org/exp_info/319
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN dna1.000000
LOWER IN bioreactor1.000000
dna0.500000
diet containing sweets0.500000
LOWER IN alimentary part of gastrointestinal system0.500000
LOWER IN homo sapiens0.500000
LOWER IN diet containing sweets0.500000
alimentary part of gastrointestinal system0.333333
LOWER IN human adult stage0.333333
bioreactor0.333333
LOWER IN oral cavity0.166667
LOWER IN dentition0.090909
LOWER IN control diet0.058824
control diet0.058824
LOWER IN colon0.055556
oral cavity0.050000
LOWER IN saliva0.050000
colon0.043478
dentition0.038462
LOWER IN feces0.033333
human adult stage0.023256
saliva0.014925
united states of america0.003333
homo sapiens0.002591
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1849gpt-5Bioreactor-cultivated human fecal communities (common united states of america, anoxic water, short-chain fatty acids, city of houston, in vitro cultivation, bioreactor, secondary bile acids, feces, alimentary part of gastrointestinal system, hypoxic water, homo sapiens, human adult stage)2025-11-15v41 / 1pendingNo
1849gpt-5Food vs human stool microbial communities (source tracking context) ( high in human adult stage feces dna alimentary part of gastrointestinal system homo sapiens compared to diet containing sweets in food united states of america control diet city of houston )2025-11-15v41 / 1pendingNo
1849gpt-5Diet intervention effect in stool: controlled diet vs regular diet days ( high in control diet dna compared to uncontrolled diet in united states of america food feces alimentary part of gastrointestinal system city of houston homo sapiens human adult stage )2025-11-15v41 / 4pendingNo
1849gpt-5Controlled-diet human fecal DNA (ITS2/18S) replicates (common united states of america, food, feces, dna, alimentary part of gastrointestinal system, city of houston, homo sapiens, control diet, human adult stage)2025-11-15v41 / 5pendingNo
1849gpt-5Food items from controlled diets (common united states of america, diet containing sweets, food, control diet, city of houston)2025-11-15v41 / 6pendingNo
1849gpt-5Human fecal samples from uncontrolled (regular) diet days (common united states of america, uncontrolled diet, food, feces, alimentary part of gastrointestinal system, city of houston, homo sapiens, human adult stage)2025-11-15v41 / 9pendingNo
1849gpt-5Human fecal samples (stool) across all assays (common united states of america, human adult stage, colon, feces, homo sapiens, city of houston)2025-11-15v41 / 10pendingNo
1849gpt-5Human fecal RNA (ITS2 cDNA) samples (dominant united states of america, human adult stage, rna, cdna, feces, alimentary part of gastrointestinal system, homo sapiens, city of houston)2025-11-15v41 / 11pendingNo
1849gpt-5Human fecal RNA (ITS2 cDNA) samples (common united states of america, human adult stage, rna, cdna, feces, alimentary part of gastrointestinal system, homo sapiens, city of houston)2025-11-15v41 / 12pendingNo
1849gpt-5In vivo vs in vitro stool communities: native feces vs bioreactor-cultivated consortia ( high in colon compared to anoxic water short-chain fatty acids in vitro cultivation bioreactor secondary bile acids alimentary part of gastrointestinal system hypoxic water in united states of america human adult stage feces homo sapiens city of houston )2025-11-15v41 / 15pendingNo
1849gpt-5Human fecal samples (stool) across all assays (dominant united states of america, human adult stage, colon, feces, homo sapiens, city of houston)2025-11-15v41 / 16pendingNo
1849gpt-5Food items from controlled diets (dominant united states of america, diet containing sweets, food, control diet, city of houston)2025-11-15v41 / 17pendingNo
1849gpt-5Bioreactor-cultivated human fecal communities (dominant united states of america, anoxic water, short-chain fatty acids, city of houston, in vitro cultivation, bioreactor, secondary bile acids, feces, alimentary part of gastrointestinal system, hypoxic water, homo sapiens, human adult stage)2025-11-15v41 / 18pendingNo
1849gpt-5Food vs human stool microbial communities (source tracking context) ( high in diet containing sweets compared to human adult stage feces dna alimentary part of gastrointestinal system homo sapiens in food united states of america control diet city of houston )2025-11-15v41 / 19pendingNo
1849gpt-5Controlled-diet human fecal DNA (ITS2/18S) replicates (dominant united states of america, food, feces, dna, alimentary part of gastrointestinal system, city of houston, homo sapiens, control diet, human adult stage)2025-11-15v41 / 20pendingNo
1849gpt-5Human fecal samples from uncontrolled (regular) diet days (dominant united states of america, uncontrolled diet, food, feces, alimentary part of gastrointestinal system, city of houston, homo sapiens, human adult stage)2025-11-15v41 / 22pendingNo
1849gpt-5Human saliva samples (dominant united states of america, fluoride toothpaste, tooth brushing after every meal, saliva, tooth brushing once per day, city of houston, homo sapiens, oral cavity, dentition, human adult stage)2025-11-15v41 / 23pendingNo
1849gpt-5Diet intervention effect in stool: controlled diet vs regular diet days ( high in uncontrolled diet compared to control diet dna in united states of america food feces alimentary part of gastrointestinal system city of houston homo sapiens human adult stage )2025-11-15v41 / 56pendingNo
1849gpt-5Diet effect on active vs total fungal signal in stool during controlled feeding ( high in rna cdna compared to food uncontrolled diet in united states of america human adult stage feces alimentary part of gastrointestinal system homo sapiens city of houston )2025-11-15v41 / 148pendingNo
1849gpt-5Body site effect: fecal vs oral (saliva) microbiomes in humans ( high in colon feces compared to fluoride toothpaste tooth brushing after every meal saliva tooth brushing once per day oral cavity dentition in united states of america city of houston homo sapiens human adult stage )2025-11-15v41 / 206pendingNo
1849gpt-5Nucleic acid target in stool mycobiome: DNA (total) vs RNA (expressed) ITS profiles ( high in rna cdna compared to food control diet dna in united states of america human adult stage feces alimentary part of gastrointestinal system homo sapiens city of houston )2025-11-15v41 / 206pendingNo
1849gpt-5Diet effect on active vs total fungal signal in stool during controlled feeding ( high in food uncontrolled diet compared to rna cdna in united states of america human adult stage feces alimentary part of gastrointestinal system homo sapiens city of houston )2025-11-15v41 / 259pendingNo
1849gpt-5Body site effect: fecal vs oral (saliva) microbiomes in humans ( high in fluoride toothpaste tooth brushing after every meal saliva tooth brushing once per day oral cavity dentition compared to colon feces in united states of america city of houston homo sapiens human adult stage )2025-11-15v41 / 393pendingNo

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