Experiment ID: 1845

Field Description
namenew york city house mice (mus musculus) as potential reservoirs for pathogenic bacteria and antimicrobial resistance determinants (5904414) - gpt-5
proj_id5904414
srasrp136544
date_of_upload15/11/2025 16:50
doi10.1128/mbio.00624-18
modelgpt-5
dbbact_id337
dbbact_linkhttps://dbbact.org/exp_info/337
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
clostridium difficile0.400000
urban biome0.400000
LOWER IN clostridium difficile0.285714
LOWER IN state of new york0.250000
new york city0.181818
LOWER IN new york city0.142857
state of new york0.125000
mus musculus0.027027
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN clostridium difficile1.000000
LOWER IN new york city0.500000
LOWER IN state of new york0.500000
clostridium difficile0.333333
urban biome0.250000
new york city0.142857
state of new york0.071429
mus musculus0.013699
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
bla act/mir1.000000
mus musculus1.000000
qnrb1.000000
residential building1.000000
united states of america1.000000
urban biome1.000000
state of new york0.500000
clostridium difficile0.500000
borough of manhattan0.500000
longitudinal sampling0.250000
bla shv0.250000
q1 site0.250000
borough of queens0.250000
fresh meadows0.250000
chelsea0.250000
new york city0.250000
LOWER IN borough of manhattan0.166667
LOWER IN state of new york0.166667
LOWER IN clostridium difficile0.166667
upper west side0.166667
x1 site0.166667
LOWER IN chelsea0.083333
LOWER IN new york city0.083333
LOWER IN longitudinal sampling0.083333
LOWER IN bla shv0.083333
LOWER IN q1 site0.083333
LOWER IN borough of queens0.083333
LOWER IN fresh meadows0.083333
Number of experiments associating the term to the sequence
TermScore
longitudinal sampling1.000000
bla shv1.000000
q1 site1.000000
state of new york1.000000
borough of queens1.000000
fresh meadows1.000000
clostridium difficile1.000000
LOWER IN borough of manhattan1.000000
LOWER IN chelsea1.000000
LOWER IN new york city1.000000
feces1.000000
bla act/mir1.000000
mus musculus1.000000
qnrb1.000000
residential building1.000000
united states of america1.000000
urban biome1.000000
borough of manhattan1.000000
chelsea1.000000
new york city1.000000
LOWER IN longitudinal sampling1.000000
LOWER IN bla shv1.000000
LOWER IN q1 site1.000000
LOWER IN state of new york1.000000
LOWER IN borough of queens1.000000
LOWER IN fresh meadows1.000000
LOWER IN clostridium difficile1.000000
upper west side1.000000
x1 site1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1845gpt-5Upper West Side (M2) mouse fecal pellets + Laconia (X1) mouse fecal pellets (dominant feces, borough of manhattan, upper west side, bla act/mir, mus musculus, qnrb, residential building, united states of america, x1 site, urban biome, state of new york, clostridium difficile)2025-11-15v41 / 14pendingNo
1845gpt-5Fresh Meadows (Q1) mouse fecal pellets (dominant feces, fresh meadows, bla act/mir, longitudinal sampling, bla shv, mus musculus, q1 site, qnrb, borough of queens, residential building, united states of america, urban biome, state of new york, clostridium difficile)2025-11-15v41 / 16pendingNo
1845gpt-5Site-specific baselines for classification (dominant feces, bla act/mir, mus musculus, qnrb, residential building, united states of america, urban biome)2025-11-15v41 / 16pendingNo
1845gpt-5Chelsea (M3) mouse fecal pellets (dominant feces, borough of manhattan, bla act/mir, mus musculus, new york city, qnrb, residential building, united states of america, urban biome, chelsea)2025-11-15v41 / 17pendingNo
1845gpt-5Upper West Side (M2) mouse fecal pellets + Laconia (X1) mouse fecal pellets (common feces, borough of manhattan, upper west side, bla act/mir, mus musculus, qnrb, residential building, united states of america, x1 site, urban biome, state of new york, clostridium difficile)2025-11-15v41 / 140pendingNo
1845gpt-5Urban gradient: high-density Manhattan site vs outer-borough Queens site ( high in borough of manhattan compared to state of new york clostridium difficile in feces bla act/mir mus musculus qnrb residential building united states of america urban biome )2025-11-15v41 / 149pendingNo
1845gpt-5Site-specific baselines for classification (common feces, bla act/mir, mus musculus, qnrb, residential building, united states of america, urban biome)2025-11-15v41 / 171pendingNo
1845gpt-5Chelsea (M3) mouse fecal pellets (common feces, borough of manhattan, bla act/mir, mus musculus, new york city, qnrb, residential building, united states of america, urban biome, chelsea)2025-11-15v41 / 177pendingNo
1845gpt-5Geographic variation in urban mouse gut microbiota: Chelsea (M3) vs Fresh Meadows (Q1) ( high in borough of manhattan chelsea new york city compared to longitudinal sampling bla shv q1 site state of new york borough of queens fresh meadows clostridium difficile in feces bla act/mir mus musculus qnrb residential building united states of america urban biome )2025-11-15v41 / 185pendingNo
1845gpt-5Fresh Meadows (Q1) mouse fecal pellets (common feces, fresh meadows, bla act/mir, longitudinal sampling, bla shv, mus musculus, q1 site, qnrb, borough of queens, residential building, united states of america, urban biome, state of new york, clostridium difficile)2025-11-15v41 / 214pendingNo
1845gpt-5Urban gradient: high-density Manhattan site vs outer-borough Queens site ( high in state of new york clostridium difficile compared to borough of manhattan in feces bla act/mir mus musculus qnrb residential building united states of america urban biome )2025-11-15v41 / 438pendingNo
1845gpt-5Geographic variation in urban mouse gut microbiota: Chelsea (M3) vs Fresh Meadows (Q1) ( high in longitudinal sampling bla shv q1 site state of new york borough of queens fresh meadows clostridium difficile compared to borough of manhattan chelsea new york city in feces bla act/mir mus musculus qnrb residential building united states of america urban biome )2025-11-15v41 / 447pendingNo

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