Experiment ID: 1838

Field Description
nameimmunoglobulin recognition of fecal bacteria in stunted and non-stunted children: findings from the afribiota study (7385872) - gpt-5
proj_id7385872
sraprjna603512
date_of_upload15/11/2025 16:10
doi10.1186/s40168-020-00890-1
modelgpt-5
dbbact_id804
dbbact_linkhttps://dbbact.org/exp_info/804
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
bangui0.500000
LOWER IN madagascar0.500000
LOWER IN bangui0.500000
LOWER IN central african republic0.500000
central african republic0.333333
LOWER IN parasitic helminthiasis infectious disease0.250000
madagascar0.250000
parasitic helminthiasis infectious disease0.250000
LOWER IN 2-5 year-old child stage0.200000
child stage0.166667
2-5 year-old child stage0.100000
intestine0.032258
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1838gpt-5Nutritional status: Stunted vs Non-stunted children (fecal microbiome) ( high in stunting compared to control in homo sapiens feces intestine child stage )2025-11-15v41 / 4pendingNo
1838gpt-5Mucosal immune targeting: IgA-positive vs IgA-negative sorted fractions ( high in iga-negative bacterial fraction compared to low intestinal igg coating iga-positive bacterial fraction 0% igg-positive bacteria in homo sapiens feces intestine child stage )2025-11-15v41 / 11pendingNo
1838gpt-5IgA-negative sorted fractions (dominant iga-negative bacterial fraction, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 15pendingNo
1838gpt-5Nutritional status: Stunted vs Non-stunted children (fecal microbiome) ( high in control compared to stunting in homo sapiens feces intestine child stage )2025-11-15v41 / 15pendingNo
1838gpt-5Non-stunted children fecal samples (dominant control, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 16pendingNo
1838gpt-5IgA-positive sorted fractions + Low/near-zero IgG-coating fecal samples (0% IgG+) (dominant low intestinal igg coating, 0% igg-positive bacteria, iga-positive bacterial fraction, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 16pendingNo
1838gpt-5Geography within stunting context: Stunted children vs Madagascar cohort ( high in stunting compared to afribiota antananarivo-renivohitra district 2-5 year-old child stage madagascar in homo sapiens feces intestine child stage )2025-11-15v41 / 16pendingNo
1838gpt-5Madagascar fecal samples (children 2–5y, Afribiota) (dominant antananarivo-renivohitra district, 2-5 year-old child stage, madagascar, feces, intestine, homo sapiens, afribiota, child stage)2025-11-15v41 / 17pendingNo
1838gpt-5Central African Republic fecal samples (children 2–5y, Afribiota) (dominant 2-5 year-old child stage, bangui, feces, intestine, central african republic, homo sapiens, afribiota, child stage)2025-11-15v41 / 17pendingNo
1838gpt-5Stunted children fecal samples (dominant stunting, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 17pendingNo
1838gpt-5High IgA-coating fecal samples (>=13% IgA+ by flow cytometry) (dominant high intestinal iga coating, feces, intestine, homo sapiens, >=13% iga-positive bacteria, child stage)2025-11-15v41 / 17pendingNo
1838gpt-5Helminth-positive children fecal samples (dominant feces, parasitic helminthiasis infectious disease, intestine, helminth carriage, homo sapiens, child stage)2025-11-15v41 / 17pendingNo
1838gpt-5Mucosal immune targeting: IgA-positive vs IgA-negative sorted fractions ( high in low intestinal igg coating iga-positive bacterial fraction 0% igg-positive bacteria compared to iga-negative bacterial fraction in homo sapiens feces intestine child stage )2025-11-15v41 / 18pendingNo
1838gpt-5High IgA-coating vs overall IgA-negative fractions (degree of IgA targeting) ( high in >=13% iga-positive bacteria high intestinal iga coating compared to iga-negative bacterial fraction in homo sapiens feces intestine child stage )2025-11-15v41 / 31pendingNo
1838gpt-5Geography within stunting context: Stunted children vs Central African Republic cohort ( high in stunting compared to afribiota 2-5 year-old child stage bangui central african republic in homo sapiens feces intestine child stage )2025-11-15v41 / 39pendingNo
1838gpt-5High IgA-coating vs overall IgA-negative fractions (degree of IgA targeting) ( high in iga-negative bacterial fraction compared to >=13% iga-positive bacteria high intestinal iga coating in homo sapiens feces intestine child stage )2025-11-15v41 / 41pendingNo
1838gpt-5Stunted children fecal samples (common stunting, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 47pendingNo
1838gpt-5IgA-positive sorted fractions + Low/near-zero IgG-coating fecal samples (0% IgG+) (common low intestinal igg coating, 0% igg-positive bacteria, iga-positive bacterial fraction, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 48pendingNo
1838gpt-5High IgA-coating fecal samples (>=13% IgA+ by flow cytometry) (common high intestinal iga coating, feces, intestine, homo sapiens, >=13% iga-positive bacteria, child stage)2025-11-15v41 / 49pendingNo
1838gpt-5Non-stunted children fecal samples (common control, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 50pendingNo
1838gpt-5IgA-negative sorted fractions (common iga-negative bacterial fraction, feces, intestine, homo sapiens, child stage)2025-11-15v41 / 50pendingNo
1838gpt-5Madagascar fecal samples (children 2–5y, Afribiota) (common antananarivo-renivohitra district, 2-5 year-old child stage, madagascar, feces, intestine, homo sapiens, afribiota, child stage)2025-11-15v41 / 51pendingNo
1838gpt-5Central African Republic fecal samples (children 2–5y, Afribiota) (common 2-5 year-old child stage, bangui, feces, intestine, central african republic, homo sapiens, afribiota, child stage)2025-11-15v41 / 53pendingNo
1838gpt-5Helminth-positive children fecal samples (common feces, parasitic helminthiasis infectious disease, intestine, helminth carriage, homo sapiens, child stage)2025-11-15v41 / 53pendingNo
1838gpt-5Geography within stunting context: Stunted children vs Madagascar cohort ( high in afribiota antananarivo-renivohitra district 2-5 year-old child stage madagascar compared to stunting in homo sapiens feces intestine child stage )2025-11-15v41 / 59pendingNo
1838gpt-5Helminth infection status: Helminth-positive vs Non-stunted children (control proxy) ( high in helminth carriage parasitic helminthiasis infectious disease compared to control in homo sapiens feces intestine child stage )2025-11-15v41 / 112pendingNo
1838gpt-5Geography within stunting context: Stunted children vs Central African Republic cohort ( high in afribiota 2-5 year-old child stage bangui central african republic compared to stunting in homo sapiens feces intestine child stage )2025-11-15v41 / 141pendingNo
1838gpt-5Geography: Madagascar vs Central African Republic (children 2–5y, fecal microbiome) ( high in antananarivo-renivohitra district madagascar compared to bangui central african republic in 2-5 year-old child stage feces intestine homo sapiens afribiota child stage )2025-11-15v41 / 190pendingNo
1838gpt-5Helminth infection status: Helminth-positive vs Non-stunted children (control proxy) ( high in control compared to helminth carriage parasitic helminthiasis infectious disease in homo sapiens feces intestine child stage )2025-11-15v41 / 258pendingNo
1838gpt-5Geography: Madagascar vs Central African Republic (children 2–5y, fecal microbiome) ( high in bangui central african republic compared to antananarivo-renivohitra district madagascar in 2-5 year-old child stage feces intestine homo sapiens afribiota child stage )2025-11-15v41 / 352pendingNo

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