Experiment ID: 1837

Field Description
namecontext-dependent dynamics lead to the assembly of functionally distinct microbial communities (7080782) - gpt-5
proj_id7080782
sraprjna559886
date_of_upload15/11/2025 16:05
doi10.1038/s41467-020-15169-0
modelgpt-5
dbbact_id614
dbbact_linkhttps://dbbact.org/exp_info/614
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
harvard forest0.666667
day 30.250000
commonwealth of massachusetts0.200000
LOWER IN day 30.100000
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
harvard forest0.500000
day 30.500000
LOWER IN day 30.500000
commonwealth of massachusetts0.111111
united states of america0.003333
Exp. ID User ID Description Date Region Sequences Status Flag
1837gpt-5Early vs near-equilibrium community states in filtered inocula (Day 3 vs Day 63) ( high in day 63 unfiltered environmental microbial community near-equilibrium serial transfer laboratory microcosm compared to day 3 in commonwealth of massachusetts chitin united states of america acidic water chitosan pitcher of sarracenia purpurea environmental bacterial community harvard forest city of cambridge filtered )2025-11-15v41 / 1pendingNo
1837gpt-5Microcosm M09 time series (filtered and unfiltered) (dominant commonwealth of massachusetts, chitin, united states of america, acidic water, chitosan, salicylic acid, pitcher of sarracenia purpurea, environmental microbial community, high biomass yield, serial transfer, time series, m09, laboratory microcosm, high chitinase activity, harvard forest, salicylic acid metabolism, no itaconic acid metabolism, city of cambridge)2025-11-15v41 / 11pendingNo
1837gpt-5Early vs near-equilibrium community states in filtered inocula (Day 3 vs Day 63) ( high in day 3 compared to day 63 unfiltered environmental microbial community near-equilibrium serial transfer laboratory microcosm in commonwealth of massachusetts chitin united states of america acidic water chitosan pitcher of sarracenia purpurea environmental bacterial community harvard forest city of cambridge filtered )2025-11-15v41 / 11pendingNo
1837gpt-5Microcosm M03 time series (filtered and unfiltered) (dominant commonwealth of massachusetts, chitin, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, environmental microbial community, high biomass yield, serial transfer, time series, laboratory microcosm, high chitinase activity, harvard forest, m03, city of cambridge)2025-11-15v41 / 13pendingNo
1837gpt-5Microcosm M09 time series (filtered and unfiltered) (common commonwealth of massachusetts, chitin, united states of america, acidic water, chitosan, salicylic acid, pitcher of sarracenia purpurea, environmental microbial community, high biomass yield, serial transfer, time series, m09, laboratory microcosm, high chitinase activity, harvard forest, salicylic acid metabolism, no itaconic acid metabolism, city of cambridge)2025-11-15v41 / 15pendingNo
1837gpt-5Unfiltered microcosm communities (whole aquatic community inocula) (common protozoa present, commonwealth of massachusetts, chitin, unfiltered, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, environmental microbial community, whole community inoculum, serial transfer, laboratory microcosm, harvard forest, city of cambridge)2025-11-15v41 / 17pendingNo
1837gpt-5Time-series comparison between microcosms M03 and M09 (community trajectories) ( high in salicylic acid metabolism salicylic acid m09 no itaconic acid metabolism compared to m03 in commonwealth of massachusetts chitin united states of america acidic water chitosan pitcher of sarracenia purpurea environmental microbial community high biomass yield serial transfer time series laboratory microcosm high chitinase activity harvard forest city of cambridge )2025-11-15v41 / 18pendingNo
1837gpt-5Filtered microcosm communities (bacteria-focused inocula) (dominant commonwealth of massachusetts, chitin, bacteria-focused inoculum, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, serial transfer, environmental bacterial community, laboratory microcosm, harvard forest, city of cambridge, filtered)2025-11-15v41 / 19pendingNo
1837gpt-5Early assembly stage samples (Day 3 across microcosms, filtered only) (dominant commonwealth of massachusetts, chitin, united states of america, acidic water, day 3, chitosan, pitcher of sarracenia purpurea, environmental bacterial community, harvard forest, city of cambridge, filtered)2025-11-15v41 / 19pendingNo
1837gpt-5Filtered microcosm communities (bacteria-focused inocula) (common commonwealth of massachusetts, chitin, bacteria-focused inoculum, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, serial transfer, environmental bacterial community, laboratory microcosm, harvard forest, city of cambridge, filtered)2025-11-15v41 / 21pendingNo
1837gpt-5Unfiltered microcosm communities (whole aquatic community inocula) (dominant protozoa present, commonwealth of massachusetts, chitin, unfiltered, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, environmental microbial community, whole community inoculum, serial transfer, laboratory microcosm, harvard forest, city of cambridge)2025-11-15v41 / 21pendingNo
1837gpt-5Near-equilibrium stage samples (Day 63 across microcosms, unfiltered only) + Near-equilibrium stage samples (Day 63 across microcosms, filtered only) (dominant commonwealth of massachusetts, day 63, unfiltered, chitin, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, environmental microbial community, serial transfer, near-equilibrium, environmental bacterial community, laboratory microcosm, harvard forest, city of cambridge, filtered)2025-11-15v41 / 21pendingNo
1837gpt-5Near-equilibrium stage samples (Day 63 across microcosms, unfiltered only) + Near-equilibrium stage samples (Day 63 across microcosms, filtered only) (common commonwealth of massachusetts, day 63, unfiltered, chitin, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, environmental microbial community, serial transfer, near-equilibrium, environmental bacterial community, laboratory microcosm, harvard forest, city of cambridge, filtered)2025-11-15v41 / 22pendingNo
1837gpt-5Microcosm M03 time series (filtered and unfiltered) (common commonwealth of massachusetts, chitin, united states of america, acidic water, chitosan, pitcher of sarracenia purpurea, environmental microbial community, high biomass yield, serial transfer, time series, laboratory microcosm, high chitinase activity, harvard forest, m03, city of cambridge)2025-11-15v41 / 24pendingNo
1837gpt-5Early assembly stage samples (Day 3 across microcosms, filtered only) (common commonwealth of massachusetts, chitin, united states of america, acidic water, day 3, chitosan, pitcher of sarracenia purpurea, environmental bacterial community, harvard forest, city of cambridge, filtered)2025-11-15v41 / 36pendingNo
1837gpt-5Effect of inoculum filtering on microcosm community assembly (filtered vs unfiltered) ( high in protozoa present unfiltered whole community inoculum environmental microbial community compared to bacteria-focused inoculum environmental bacterial community filtered in commonwealth of massachusetts chitin united states of america acidic water chitosan pitcher of sarracenia purpurea serial transfer laboratory microcosm harvard forest city of cambridge )2025-11-15v41 / 36pendingNo
1837gpt-5Time-series comparison between microcosms M03 and M09 (community trajectories) ( high in m03 compared to salicylic acid metabolism salicylic acid m09 no itaconic acid metabolism in commonwealth of massachusetts chitin united states of america acidic water chitosan pitcher of sarracenia purpurea environmental microbial community high biomass yield serial transfer time series laboratory microcosm high chitinase activity harvard forest city of cambridge )2025-11-15v41 / 39pendingNo
1837gpt-5Effect of inoculum filtering on microcosm community assembly (filtered vs unfiltered) ( high in bacteria-focused inoculum environmental bacterial community filtered compared to protozoa present unfiltered whole community inoculum environmental microbial community in commonwealth of massachusetts chitin united states of america acidic water chitosan pitcher of sarracenia purpurea serial transfer laboratory microcosm harvard forest city of cambridge )2025-11-15v41 / 51pendingNo

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