Experiment ID: 1836

Field Description
nameprofiling the airway in the macaque model of tuberculosis reveals variable microbial dysbiosis and alteration of community structure (6178261) - gpt-5
proj_id6178261
sraprjna436553
date_of_upload15/11/2025 16:05
doi10.1186/s40168-018-0560-y
modelgpt-5
dbbact_id817
dbbact_linkhttps://dbbact.org/exp_info/817
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN macaca fascicularis1.000000
macaca fascicularis0.500000
cheek pouch0.500000
LOWER IN bronchoalveolar lavage0.500000
LOWER IN cheek pouch0.500000
LOWER IN oral cavity0.166667
bronchoalveolar lavage0.142857
lung0.100000
oral cavity0.050000
LOWER IN control0.004545
control0.004444
united states of america0.003333
Exp. ID User ID Description Date Region Sequences Status Flag
1836gpt-5Left vs right lower lobe BAL (intra-lung site differences) ( high in lower lobe of left lung compared to lower lobe of right lung in tuberculosis mycobacterium tuberculosis infection city of pittsburgh united states of america bronchoalveolar lavage macaca fascicularis biosafety level 3 facility )2025-11-15v41 / 3pendingNo
1836gpt-5Left vs right lower lobe BAL (intra-lung site differences) ( high in lower lobe of right lung compared to lower lobe of left lung in tuberculosis mycobacterium tuberculosis infection city of pittsburgh united states of america bronchoalveolar lavage macaca fascicularis biosafety level 3 facility )2025-11-15v41 / 3pendingNo
1836gpt-5Bronchoscope saline control (SC/SS) samples (dominant bronchoscope, control, saline, city of pittsburgh, united states of america, respiratory tract metagenome, biosafety level 3 facility)2025-11-15v41 / 8pendingNo
1836gpt-5Bronchoscope saline control (SC/SS) samples (common bronchoscope, control, saline, city of pittsburgh, united states of america, respiratory tract metagenome, biosafety level 3 facility)2025-11-15v41 / 9pendingNo
1836gpt-5Baseline timepoint samples (suffix 0 or B) (dominant lung, control, city of pittsburgh, united states of america, bronchoalveolar lavage, macaca fascicularis, biosafety level 3 facility, pre-infection)2025-11-15v41 / 14pendingNo
1836gpt-5Temporal trajectory from baseline to 4 months (dominant lung, city of pittsburgh, united states of america, bronchoalveolar lavage, macaca fascicularis, biosafety level 3 facility)2025-11-15v41 / 14pendingNo
1836gpt-5Bronchoalveolar lavage (BAL) samples (dominant tuberculosis, lung, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, biosafety level 3 facility)2025-11-15v41 / 15pendingNo
1836gpt-5Right lower lobe BAL samples (dominant tuberculosis, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, lower lobe of right lung, biosafety level 3 facility)2025-11-15v41 / 15pendingNo
1836gpt-5Month 1 post-infection samples (suffix 1 or 1B) (dominant tuberculosis, lung, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, biosafety level 3 facility, 1 month post-infection)2025-11-15v41 / 15pendingNo
1836gpt-5Month 4 post-infection samples (suffix 4 or 11/14/15 groups per cohort schema) (dominant tuberculosis, lung, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, 4 months post-infection, biosafety level 3 facility)2025-11-15v41 / 15pendingNo
1836gpt-5Oral wash (OW) samples (dominant tuberculosis, city of pittsburgh, united states of america, oral cavity, macaca fascicularis, cheek pouch, biosafety level 3 facility)2025-11-15v41 / 18pendingNo
1836gpt-5Temporal dynamics: baseline vs 1 month ( high in pre-infection control compared to tuberculosis 1 month post-infection mycobacterium tuberculosis infection in lung city of pittsburgh united states of america bronchoalveolar lavage macaca fascicularis biosafety level 3 facility )2025-11-15v41 / 21pendingNo
1836gpt-5Temporal dynamics: baseline vs 1 month ( high in tuberculosis 1 month post-infection mycobacterium tuberculosis infection compared to pre-infection control in lung city of pittsburgh united states of america bronchoalveolar lavage macaca fascicularis biosafety level 3 facility )2025-11-15v41 / 22pendingNo
1836gpt-5Month 1 post-infection samples (suffix 1 or 1B) (common tuberculosis, lung, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, biosafety level 3 facility, 1 month post-infection)2025-11-15v41 / 31pendingNo
1836gpt-5Baseline timepoint samples (suffix 0 or B) (common lung, control, city of pittsburgh, united states of america, bronchoalveolar lavage, macaca fascicularis, biosafety level 3 facility, pre-infection)2025-11-15v41 / 38pendingNo
1836gpt-5Temporal trajectory from baseline to 4 months (common lung, city of pittsburgh, united states of america, bronchoalveolar lavage, macaca fascicularis, biosafety level 3 facility)2025-11-15v41 / 39pendingNo
1836gpt-5Environmental/bronchoscope control vs biological samples (contamination assessment) ( high in saline bronchoscope control respiratory tract metagenome compared to tuberculosis macaca fascicularis in biosafety level 3 facility city of pittsburgh united states of america )2025-11-15v41 / 47pendingNo
1836gpt-5Bronchoalveolar lavage (BAL) samples (common tuberculosis, lung, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, biosafety level 3 facility)2025-11-15v41 / 53pendingNo
1836gpt-5Right lower lobe BAL samples (common tuberculosis, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, lower lobe of right lung, biosafety level 3 facility)2025-11-15v41 / 55pendingNo
1836gpt-5Month 4 post-infection samples (suffix 4 or 11/14/15 groups per cohort schema) (common tuberculosis, lung, mycobacterium tuberculosis infection, city of pittsburgh, bronchoalveolar lavage, united states of america, macaca fascicularis, 4 months post-infection, biosafety level 3 facility)2025-11-15v41 / 66pendingNo
1836gpt-5Oral wash (OW) samples (common tuberculosis, city of pittsburgh, united states of america, oral cavity, macaca fascicularis, cheek pouch, biosafety level 3 facility)2025-11-15v41 / 72pendingNo
1836gpt-5Lower airway vs upper airway/oral microbiome ( high in mycobacterium tuberculosis infection bronchoalveolar lavage compared to oral cavity cheek pouch in tuberculosis city of pittsburgh united states of america macaca fascicularis biosafety level 3 facility )2025-11-15v41 / 126pendingNo
1836gpt-5Lower airway vs upper airway/oral microbiome ( high in oral cavity cheek pouch compared to mycobacterium tuberculosis infection bronchoalveolar lavage in tuberculosis city of pittsburgh united states of america macaca fascicularis biosafety level 3 facility )2025-11-15v41 / 149pendingNo
1836gpt-5Environmental/bronchoscope control vs biological samples (contamination assessment) ( high in tuberculosis macaca fascicularis compared to saline bronchoscope control respiratory tract metagenome in biosafety level 3 facility city of pittsburgh united states of america )2025-11-15v41 / 346pendingNo

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