Experiment ID: 1821

Field Description
namea single vibrionales 16s rrna oligotype dominates the intestinal microbiome in two geographically separated atlantic cod populations (6053498) - gpt-5
proj_id6053498
sraprjeb22384
date_of_upload15/11/2025 15:35
doi10.3389/fmicb.2018.01561
modelgpt-5
dbbact_id268
dbbact_linkhttps://dbbact.org/exp_info/268
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
gadus morhua0.666667
intestinal mucosa0.610169
gut content0.305085
LOWER IN gut content0.296296
hindgut0.285714
mucosa0.273973
LOWER IN intestinal mucosa0.230769
kingdom of norway0.222222
LOWER IN mucosa0.171429
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN intestinal mucosa1.000000
LOWER IN gut content1.000000
intestinal mucosa0.500000
gadus morhua0.500000
gut content0.250000
LOWER IN mucosa0.250000
mucosa0.200000
hindgut0.166667
kingdom of norway0.125000
Fraction of annotations for the query sequences containing the term
TermScore
gadus morhua1.000000
kingdom of norway1.000000
hindgut1.000000
marine environment1.000000
intestinal mucosa0.782609
mucosa0.434783
lofoten islands0.434783
lumen of intestine0.391304
gut content0.391304
mixed sample0.347826
LOWER IN lumen of intestine0.173913
LOWER IN gut content0.173913
LOWER IN lofoten islands0.130435
LOWER IN mucosa0.130435
LOWER IN intestinal mucosa0.130435
LOWER IN mixed sample0.086957
Number of experiments associating the term to the sequence
TermScore
mucosa1.000000
intestinal mucosa1.000000
LOWER IN lofoten islands1.000000
gadus morhua1.000000
lumen of intestine1.000000
kingdom of norway1.000000
gut content1.000000
hindgut1.000000
marine environment1.000000
lofoten islands1.000000
LOWER IN mucosa1.000000
LOWER IN intestinal mucosa1.000000
LOWER IN mixed sample1.000000
mixed sample1.000000
LOWER IN lumen of intestine1.000000
LOWER IN gut content1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1821gpt-5Gut content vs mucosa within Lofoten (body-site differences) ( high in mucosa intestinal mucosa compared to lumen of intestine gut content in gadus morhua kingdom of norway lofoten islands hindgut marine environment )2025-11-15v41 / 1pendingNo
1821gpt-5Body-site effect consistent across locations (gut vs mucosa pooled by location) ( high in mucosa intestinal mucosa compared to lumen of intestine gut content in hindgut marine environment kingdom of norway gadus morhua )2025-11-15v41 / 3pendingNo
1821gpt-5Lofoten vs Sørøya within mucosa (geographic or sampling-site differences) ( high in lofoten islands compared to lumen of intestine gut content in gadus morhua kingdom of norway hindgut mucosa marine environment intestinal mucosa )2025-11-15v41 / 5pendingNo
1821gpt-5Body-site effect consistent across locations (gut vs mucosa pooled by location) ( high in lumen of intestine gut content compared to mucosa intestinal mucosa in hindgut marine environment kingdom of norway gadus morhua )2025-11-15v41 / 6pendingNo
1821gpt-5Lofoten mucosa replicates (dominant gadus morhua, kingdom of norway, lofoten islands, hindgut, mucosa, marine environment, intestinal mucosa)2025-11-15v41 / 7pendingNo
1821gpt-5Sørøya mucosa replicates + Sørøya gut content replicates (dominant gadus morhua, lumen of intestine, kingdom of norway, gut content, hindgut, mucosa, marine environment, intestinal mucosa)2025-11-15v41 / 7pendingNo
1821gpt-5Lofoten gut content replicates (dominant gadus morhua, lumen of intestine, kingdom of norway, lofoten islands, gut content, hindgut, marine environment)2025-11-15v41 / 8pendingNo
1821gpt-5Lofoten mixed (gut+mucosa) replicates (dominant gadus morhua, mixed sample, kingdom of norway, lofoten islands, hindgut, marine environment, intestinal mucosa)2025-11-15v41 / 8pendingNo
1821gpt-5Sørøya mixed (gut+mucosa) replicates (dominant gadus morhua, mixed sample, kingdom of norway, hindgut, marine environment, intestinal mucosa)2025-11-15v41 / 10pendingNo
1821gpt-5Lofoten gut content replicates (common gadus morhua, lumen of intestine, kingdom of norway, lofoten islands, gut content, hindgut, marine environment)2025-11-15v41 / 16pendingNo
1821gpt-5Lofoten mixed (gut+mucosa) replicates (common gadus morhua, mixed sample, kingdom of norway, lofoten islands, hindgut, marine environment, intestinal mucosa)2025-11-15v41 / 16pendingNo
1821gpt-5Lofoten mucosa replicates (common gadus morhua, kingdom of norway, lofoten islands, hindgut, mucosa, marine environment, intestinal mucosa)2025-11-15v41 / 19pendingNo
1821gpt-5Lofoten vs Sørøya within mucosa (geographic or sampling-site differences) ( high in lumen of intestine gut content compared to lofoten islands in gadus morhua kingdom of norway hindgut mucosa marine environment intestinal mucosa )2025-11-15v41 / 20pendingNo
1821gpt-5Lofoten vs Sørøya within mixed (gut+mucosa) samples ( high in compared to lofoten islands in gadus morhua mixed sample kingdom of norway hindgut marine environment intestinal mucosa )2025-11-15v41 / 22pendingNo
1821gpt-5Sørøya mixed (gut+mucosa) replicates (common gadus morhua, mixed sample, kingdom of norway, hindgut, marine environment, intestinal mucosa)2025-11-15v41 / 22pendingNo
1821gpt-5Mixed (gut+mucosa) vs gut content within each location ( high in mixed sample intestinal mucosa compared to lumen of intestine gut content in hindgut marine environment kingdom of norway gadus morhua )2025-11-15v41 / 25pendingNo
1821gpt-5Sørøya mucosa replicates + Sørøya gut content replicates (common gadus morhua, lumen of intestine, kingdom of norway, gut content, hindgut, mucosa, marine environment, intestinal mucosa)2025-11-15v41 / 26pendingNo
1821gpt-5Lofoten vs Sørøya within mixed (gut+mucosa) samples ( high in lofoten islands compared to in gadus morhua mixed sample kingdom of norway hindgut marine environment intestinal mucosa )2025-11-15v41 / 34pendingNo
1821gpt-5Mixed (gut+mucosa) vs mucosa within each location ( high in mixed sample compared to mucosa in gadus morhua kingdom of norway hindgut marine environment intestinal mucosa )2025-11-15v41 / 39pendingNo
1821gpt-5Mixed (gut+mucosa) vs gut content within each location ( high in lumen of intestine gut content compared to mixed sample intestinal mucosa in hindgut marine environment kingdom of norway gadus morhua )2025-11-15v41 / 62pendingNo
1821gpt-5Mixed (gut+mucosa) vs mucosa within each location ( high in mucosa compared to mixed sample in gadus morhua kingdom of norway hindgut marine environment intestinal mucosa )2025-11-15v41 / 63pendingNo
1821gpt-5Lofoten vs Sørøya within gut content (geographic or sampling-site differences) ( high in lofoten islands compared to mucosa intestinal mucosa in gadus morhua lumen of intestine kingdom of norway gut content hindgut marine environment )2025-11-15v41 / 72pendingNo
1821gpt-5Lofoten vs Sørøya within gut content (geographic or sampling-site differences) ( high in mucosa intestinal mucosa compared to lofoten islands in gadus morhua lumen of intestine kingdom of norway gut content hindgut marine environment )2025-11-15v41 / 86pendingNo

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