Experiment ID: 1805

Field Description
namecharacterization of rumen microbiota of two sheep breeds supplemented with direct-fed lactic acid bacteria (7843511) - gpt-5
proj_id7843511
sraprjna578022
date_of_upload15/11/2025 15:13
doi10.3389/fvets.2020.570074
modelgpt-5
dbbact_id929
dbbact_linkhttps://dbbact.org/exp_info/929
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
gauteng province0.666667
meatmaster sheep0.586207
LOWER IN meatmaster sheep0.200000
negative control0.142857
male organism0.111111
ovis aries0.111111
female organism0.100000
rumen0.071429
farm0.045455
control0.008439
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN meatmaster sheep0.500000
gauteng province0.500000
meatmaster sheep0.500000
negative control0.500000
male organism0.058824
ovis aries0.058824
female organism0.052632
rumen0.037037
farm0.023256
control0.004444
Fraction of annotations for the query sequences containing the term
TermScore
rumen1.000000
rumen contents1.000000
gauteng province1.000000
republic of south africa1.000000
male organism1.000000
farm1.000000
female organism1.000000
ovis aries1.000000
lactobacillus rhamnosus0.708333
meatmaster sheep0.708333
post-trial0.375000
pre-trial0.375000
antibiotic supplementation0.250000
probiotic supplementation0.250000
damara breed0.208333
LOWER IN meatmaster sheep0.125000
LOWER IN damara breed0.125000
LOWER IN pre-trial0.125000
LOWER IN lactobacillus rhamnosus0.125000
LOWER IN post-trial0.125000
single probiotic0.083333
probiotic combination0.083333
positive control0.083333
control0.083333
probiotic treatment0.083333
negative control0.083333
antibiotic treatment0.083333
rumensin0.083333
Number of experiments associating the term to the sequence
TermScore
damara breed1.000000
LOWER IN meatmaster sheep1.000000
lactobacillus rhamnosus1.000000
rumen1.000000
rumen contents1.000000
antibiotic supplementation1.000000
probiotic supplementation1.000000
gauteng province1.000000
republic of south africa1.000000
male organism1.000000
farm1.000000
female organism1.000000
ovis aries1.000000
meatmaster sheep1.000000
LOWER IN damara breed1.000000
LOWER IN pre-trial1.000000
post-trial1.000000
pre-trial1.000000
LOWER IN lactobacillus rhamnosus1.000000
LOWER IN post-trial1.000000
single probiotic1.000000
probiotic combination1.000000
positive control1.000000
control1.000000
probiotic treatment1.000000
negative control1.000000
antibiotic treatment1.000000
rumensin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1805gpt-5Meatmaster post-trial rumen samples (dominant lactobacillus rhamnosus, rumen, rumen contents, meatmaster sheep, post-trial, male organism, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 2pendingNo
1805gpt-5Post-trial rumen samples (all breeds) (dominant lactobacillus rhamnosus, rumen, rumen contents, meatmaster sheep, post-trial, male organism, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 3pendingNo
1805gpt-5Meatmaster sheep rumen samples (dominant lactobacillus rhamnosus, rumen, rumen contents, antibiotic supplementation, meatmaster sheep, male organism, probiotic supplementation, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 4pendingNo
1805gpt-5Antibiotic-treated rumen samples (T5) + Negative control rumen samples (T1) + Single-probiotic PT9 rumen samples (T2) + Single-probiotic PT10 rumen samples (T3) + Combination-probiotic rumen samples (T4) (dominant single probiotic, lactobacillus rhamnosus, probiotic combination, positive control, control, rumen, rumen contents, ovis aries, probiotic treatment, male organism, negative control, republic of south africa, gauteng province, antibiotic treatment, female organism, farm, rumensin)2025-11-15v31 / 4pendingNo
1805gpt-5Damara sheep rumen samples (dominant lactobacillus rhamnosus, damara breed, rumen, rumen contents, antibiotic supplementation, male organism, probiotic supplementation, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 5pendingNo
1805gpt-5Pre-trial rumen samples (all breeds) (dominant rumen, rumen contents, ovis aries, meatmaster sheep, male organism, republic of south africa, gauteng province, farm, female organism, pre-trial)2025-11-15v31 / 6pendingNo
1805gpt-5Meatmaster pre-trial rumen samples (dominant rumen, rumen contents, ovis aries, meatmaster sheep, male organism, republic of south africa, gauteng province, farm, female organism, pre-trial)2025-11-15v31 / 8pendingNo
1805gpt-5Trial effect on rumen microbiome: Pre- vs Post-trial (all breeds) ( high in pre-trial compared to lactobacillus rhamnosus post-trial in rumen rumen contents meatmaster sheep gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 17pendingNo
1805gpt-5Trial effect on rumen microbiome: Pre- vs Post-trial (all breeds) ( high in lactobacillus rhamnosus post-trial compared to pre-trial in rumen rumen contents meatmaster sheep gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 88pendingNo
1805gpt-5Within-breed temporal shift: Meatmaster pre- vs post-trial ( high in pre-trial compared to lactobacillus rhamnosus post-trial in rumen rumen contents meatmaster sheep gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 96pendingNo
1805gpt-5Within-breed temporal shift: Meatmaster pre- vs post-trial ( high in lactobacillus rhamnosus post-trial compared to pre-trial in rumen rumen contents meatmaster sheep gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 349pendingNo
1805gpt-5Pre-trial rumen samples (all breeds) (common rumen, rumen contents, ovis aries, meatmaster sheep, male organism, republic of south africa, gauteng province, farm, female organism, pre-trial)2025-11-15v31 / 379pendingNo
1805gpt-5Antibiotic-treated rumen samples (T5) + Negative control rumen samples (T1) + Single-probiotic PT9 rumen samples (T2) + Single-probiotic PT10 rumen samples (T3) + Combination-probiotic rumen samples (T4) (common single probiotic, lactobacillus rhamnosus, probiotic combination, positive control, control, rumen, rumen contents, ovis aries, probiotic treatment, male organism, negative control, republic of south africa, gauteng province, antibiotic treatment, female organism, farm, rumensin)2025-11-15v31 / 396pendingNo
1805gpt-5Meatmaster sheep rumen samples (common lactobacillus rhamnosus, rumen, rumen contents, antibiotic supplementation, meatmaster sheep, male organism, probiotic supplementation, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 431pendingNo
1805gpt-5Breed differences at baseline: Damara vs Meatmaster (pre-trial only) ( high in meatmaster sheep compared to lactobacillus rhamnosus damara breed post-trial in rumen rumen contents ovis aries gauteng province republic of south africa male organism farm female organism pre-trial )2025-11-15v31 / 431pendingNo
1805gpt-5Meatmaster pre-trial rumen samples (common rumen, rumen contents, ovis aries, meatmaster sheep, male organism, republic of south africa, gauteng province, farm, female organism, pre-trial)2025-11-15v31 / 432pendingNo
1805gpt-5Post-trial rumen samples (all breeds) (common lactobacillus rhamnosus, rumen, rumen contents, meatmaster sheep, post-trial, male organism, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 495pendingNo
1805gpt-5Damara sheep rumen samples (common lactobacillus rhamnosus, damara breed, rumen, rumen contents, antibiotic supplementation, male organism, probiotic supplementation, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 579pendingNo
1805gpt-5Breed differences after intervention: Damara vs Meatmaster (post-trial only) ( high in damara breed pre-trial compared to meatmaster sheep in lactobacillus rhamnosus rumen rumen contents post-trial gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 668pendingNo
1805gpt-5Meatmaster post-trial rumen samples (common lactobacillus rhamnosus, rumen, rumen contents, meatmaster sheep, post-trial, male organism, republic of south africa, gauteng province, farm, female organism, ovis aries)2025-11-15v31 / 669pendingNo
1805gpt-5Breed effect on rumen microbiome: Damara vs Meatmaster (all samples) ( high in meatmaster sheep compared to damara breed in lactobacillus rhamnosus rumen rumen contents antibiotic supplementation probiotic supplementation gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 710pendingNo
1805gpt-5Breed differences at baseline: Damara vs Meatmaster (pre-trial only) ( high in lactobacillus rhamnosus damara breed post-trial compared to meatmaster sheep in rumen rumen contents ovis aries gauteng province republic of south africa male organism farm female organism pre-trial )2025-11-15v31 / 814pendingNo
1805gpt-5Breed differences after intervention: Damara vs Meatmaster (post-trial only) ( high in meatmaster sheep compared to damara breed pre-trial in lactobacillus rhamnosus rumen rumen contents post-trial gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 962pendingNo
1805gpt-5Breed effect on rumen microbiome: Damara vs Meatmaster (all samples) ( high in damara breed compared to meatmaster sheep in lactobacillus rhamnosus rumen rumen contents antibiotic supplementation probiotic supplementation gauteng province republic of south africa male organism farm female organism ovis aries )2025-11-15v31 / 1359pendingNo

Problems / suggestions? Please visit the dbBact forum