Experiment ID: 1780

Field Description
nameinfluence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice (4768707) - gpt-5
proj_id4768707
sraprjna281761
date_of_upload15/11/2025 14:10
doi10.7717/peerj.1702
modelgpt-5
dbbact_id39
dbbact_linkhttps://dbbact.org/exp_info/39
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
whole wheat diet0.444444
diabetes mellitus0.421053
left colon0.400000
LOWER IN whole wheat diet0.222222
LOWER IN diabetes mellitus0.200000
LOWER IN obesity0.166667
obesity0.119403
male organism0.111111
mus musculus0.027027
LOWER IN control0.008811
control0.008753
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
whole wheat diet1.000000
LOWER IN whole wheat diet0.500000
diabetes mellitus0.333333
LOWER IN diabetes mellitus0.333333
left colon0.250000
LOWER IN obesity0.200000
obesity0.066667
male organism0.058824
mus musculus0.013699
LOWER IN control0.004545
control0.004444
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
laboratory facility1.000000
city of pullman1.000000
male organism1.000000
city of davis1.000000
united states of america1.000000
left colon1.000000
city of college station1.000000
feces1.000000
mus musculus1.000000
diabetes mellitus0.571429
obesity0.571429
whole wheat diet0.285714
whole-wheat0.285714
db/db genotype0.285714
obese phenotype0.285714
control0.285714
lean phenotype0.285714
LOWER IN lean phenotype0.142857
LOWER IN control0.142857
LOWER IN whole wheat diet0.142857
LOWER IN whole-wheat0.142857
LOWER IN db/db genotype0.142857
LOWER IN obese phenotype0.142857
LOWER IN obesity0.142857
LOWER IN diabetes mellitus0.142857
Number of experiments associating the term to the sequence
TermScore
whole wheat diet1.000000
laboratory facility1.000000
city of pullman1.000000
male organism1.000000
city of davis1.000000
united states of america1.000000
left colon1.000000
city of college station1.000000
feces1.000000
mus musculus1.000000
diabetes mellitus1.000000
obesity1.000000
whole-wheat1.000000
db/db genotype1.000000
obese phenotype1.000000
control1.000000
lean phenotype1.000000
LOWER IN lean phenotype1.000000
LOWER IN control1.000000
LOWER IN whole wheat diet1.000000
LOWER IN whole-wheat1.000000
LOWER IN db/db genotype1.000000
LOWER IN obese phenotype1.000000
LOWER IN obesity1.000000
LOWER IN diabetes mellitus1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1780gpt-5Obese mice with whole-wheat diet (WW) fecal samples (dominant whole wheat diet, laboratory facility, city of pullman, male organism, city of davis, united states of america, left colon, city of college station, feces, mus musculus, diabetes mellitus, obesity, whole-wheat)2025-11-15v41 / 16pendingNo
1780gpt-5Lean mice fecal samples (dominant laboratory facility, control, city of pullman, city of davis, lean phenotype, united states of america, left colon, city of college station, feces, mus musculus, male organism)2025-11-15v41 / 17pendingNo
1780gpt-5Three-way obesity and diet context (classification/baseline across groups) (dominant laboratory facility, city of pullman, city of davis, united states of america, left colon, city of college station, feces, mus musculus, male organism)2025-11-15v41 / 19pendingNo
1780gpt-5Obese-control mice fecal samples (dominant db/db genotype, laboratory facility, obese phenotype, city of pullman, male organism, city of davis, united states of america, left colon, city of college station, feces, mus musculus, diabetes mellitus, obesity)2025-11-15v41 / 20pendingNo
1780gpt-5Obesity status: Lean vs Obese-control in mice (fecal microbiome) ( high in lean phenotype control compared to db/db genotype diabetes mellitus obesity obese phenotype in laboratory facility city of pullman city of davis united states of america left colon city of college station feces mus musculus male organism )2025-11-15v41 / 24pendingNo
1780gpt-5Whole-wheat diet in obesity vs Lean baseline (fecal microbiome) ( high in lean phenotype control compared to obesity whole wheat diet diabetes mellitus whole-wheat in laboratory facility city of pullman city of davis united states of america left colon city of college station feces mus musculus male organism )2025-11-15v41 / 36pendingNo
1780gpt-5Dietary intervention effect in obesity: Whole-wheat diet vs Obese-control (fecal microbiome) ( high in whole wheat diet whole-wheat compared to db/db genotype obese phenotype in laboratory facility city of pullman male organism city of davis united states of america left colon city of college station feces mus musculus diabetes mellitus obesity )2025-11-15v41 / 72pendingNo
1780gpt-5Obesity status: Lean vs Obese-control in mice (fecal microbiome) ( high in db/db genotype diabetes mellitus obesity obese phenotype compared to lean phenotype control in laboratory facility city of pullman city of davis united states of america left colon city of college station feces mus musculus male organism )2025-11-15v41 / 85pendingNo
1780gpt-5Dietary intervention effect in obesity: Whole-wheat diet vs Obese-control (fecal microbiome) ( high in db/db genotype obese phenotype compared to whole wheat diet whole-wheat in laboratory facility city of pullman male organism city of davis united states of america left colon city of college station feces mus musculus diabetes mellitus obesity )2025-11-15v41 / 88pendingNo
1780gpt-5Whole-wheat diet in obesity vs Lean baseline (fecal microbiome) ( high in obesity whole wheat diet diabetes mellitus whole-wheat compared to lean phenotype control in laboratory facility city of pullman city of davis united states of america left colon city of college station feces mus musculus male organism )2025-11-15v41 / 105pendingNo
1780gpt-5Three-way obesity and diet context (classification/baseline across groups) (common laboratory facility, city of pullman, city of davis, united states of america, left colon, city of college station, feces, mus musculus, male organism)2025-11-15v41 / 114pendingNo
1780gpt-5Lean mice fecal samples (common laboratory facility, control, city of pullman, city of davis, lean phenotype, united states of america, left colon, city of college station, feces, mus musculus, male organism)2025-11-15v41 / 120pendingNo
1780gpt-5Obese-control mice fecal samples (common db/db genotype, laboratory facility, obese phenotype, city of pullman, male organism, city of davis, united states of america, left colon, city of college station, feces, mus musculus, diabetes mellitus, obesity)2025-11-15v41 / 160pendingNo
1780gpt-5Obese mice with whole-wheat diet (WW) fecal samples (common whole wheat diet, laboratory facility, city of pullman, male organism, city of davis, united states of america, left colon, city of college station, feces, mus musculus, diabetes mellitus, obesity, whole-wheat)2025-11-15v41 / 179pendingNo

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