Experiment ID: 1758

Field Description
nameassociation between the microbiomes of tonsil and saliva samples isolated from pediatric patients subjected to tonsillectomy for the treatment of tonsillar hyperplasia (8080726) - gpt-5
proj_id8080726
sraprjna615768
date_of_upload12/11/2025 13:22
doi10.1038/s12276-020-00487-6
modelgpt-5
dbbact_id679
dbbact_linkhttps://dbbact.org/exp_info/679
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
child stage0.285714
LOWER IN tonsil0.250000
LOWER IN palatine tonsil0.250000
tonsil0.222222
palatine tonsil0.222222
hospital0.181818
6-12 year-old child stage0.166667
LOWER IN oral cavity0.166667
south korea0.100000
oral cavity0.090909
LOWER IN saliva0.076923
saliva0.028986
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN tonsil0.500000
LOWER IN palatine tonsil0.500000
child stage0.166667
LOWER IN oral cavity0.166667
tonsil0.142857
palatine tonsil0.142857
hospital0.100000
6-12 year-old child stage0.090909
south korea0.052632
oral cavity0.050000
LOWER IN saliva0.050000
saliva0.014925
homo sapiens0.002591
Exp. ID User ID Description Date Region Sequences Status Flag
1758gpt-5Pediatric saliva microbiome samples (dominant 6-12 year-old child stage, no breastfeeding, no food or drink for at least 9 hours, child stage, oral cavity, no tooth brushing since previous night, tonsillectomy patients, homo sapiens, no recent tonsillitis, hospital, pre-surgery fasting, no antibiotic use in last 3 months, south korea, obstructive sleep apnea, saliva material, no oral rinse use, daejeon metropolitan city, saliva, no systemic disease)2025-11-12v31 / 7pendingNo
1758gpt-5Pediatric tonsillar tissue microbiome samples (dominant hospital, 6-12 year-old child stage, surgically resected tissue, no oral rinse use, pre-surgery fasting, tonsil, no antibiotic use in last 3 months, palatine tonsil, south korea, no breastfeeding, obstructive sleep apnea, tonsillectomy patients, daejeon metropolitan city, homo sapiens, no systemic disease, no recent tonsillitis, child stage)2025-11-12v31 / 19pendingNo
1758gpt-5Oral site microbiome: saliva vs tonsillar tissue in pediatrics ( high in surgically resected tissue tonsil palatine tonsil compared to no tooth brushing since previous night saliva material no food or drink for at least 9 hours saliva oral cavity in hospital 6-12 year-old child stage no systemic disease pre-surgery fasting no antibiotic use in last 3 months south korea obstructive sleep apnea no breastfeeding tonsillectomy patients daejeon metropolitan city homo sapiens no oral rinse use no recent tonsillitis child stage )2025-11-12v31 / 41pendingNo
1758gpt-5Pediatric saliva microbiome samples (common 6-12 year-old child stage, no breastfeeding, no food or drink for at least 9 hours, child stage, oral cavity, no tooth brushing since previous night, tonsillectomy patients, homo sapiens, no recent tonsillitis, hospital, pre-surgery fasting, no antibiotic use in last 3 months, south korea, obstructive sleep apnea, saliva material, no oral rinse use, daejeon metropolitan city, saliva, no systemic disease)2025-11-12v31 / 53pendingNo
1758gpt-5Pediatric tonsillar tissue microbiome samples (common hospital, 6-12 year-old child stage, surgically resected tissue, no oral rinse use, pre-surgery fasting, tonsil, no antibiotic use in last 3 months, palatine tonsil, south korea, no breastfeeding, obstructive sleep apnea, tonsillectomy patients, daejeon metropolitan city, homo sapiens, no systemic disease, no recent tonsillitis, child stage)2025-11-12v31 / 64pendingNo
1758gpt-5Oral site microbiome: saliva vs tonsillar tissue in pediatrics ( high in no tooth brushing since previous night saliva material no food or drink for at least 9 hours saliva oral cavity compared to surgically resected tissue tonsil palatine tonsil in hospital 6-12 year-old child stage no systemic disease pre-surgery fasting no antibiotic use in last 3 months south korea obstructive sleep apnea no breastfeeding tonsillectomy patients daejeon metropolitan city homo sapiens no oral rinse use no recent tonsillitis child stage )2025-11-12v31 / 391pendingNo

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