Experiment ID: 1755

Field Description
namethe microbial biogeography of the gastrointestinal tract of preterm and term lambs (7272652) - gpt-5
proj_id7272652
sraprjna594238
date_of_upload12/11/2025 13:01
doi10.1038/s41598-020-66056-z
modelgpt-5
dbbact_id649
dbbact_linkhttps://dbbact.org/exp_info/649
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
premature birth0.666667
luminal content0.315789
small intestine0.285714
mucosa0.263158
new zealand0.250000
jejunum0.194175
LOWER IN luminal content0.133333
duodenum0.122699
LOWER IN mucosa0.117647
ovis aries0.111111
LOWER IN male organism0.105263
ileum0.100000
LOWER IN jejunum0.095238
female organism0.085714
male organism0.085106
colon0.083333
LOWER IN duodenum0.080000
Fraction of dbbact annotations with this term covered by the query
TermScore
luminal content0.500000
premature birth0.500000
LOWER IN luminal content0.500000
LOWER IN mucosa0.250000
mucosa0.200000
small intestine0.166667
LOWER IN male organism0.166667
new zealand0.142857
LOWER IN jejunum0.125000
jejunum0.111111
LOWER IN duodenum0.083333
duodenum0.066667
ovis aries0.058824
male organism0.058824
ileum0.052632
female organism0.052632
colon0.043478
Fraction of annotations for the query sequences containing the term
TermScore
rotorua1.000000
postnatal age six weeks1.000000
small intestine1.000000
ovis aries1.000000
premature birth1.000000
new zealand1.000000
colon1.000000
ileum1.000000
duodenum0.769231
jejunum0.769231
mucosa0.384615
luminal content0.230769
female organism0.230769
male organism0.153846
LOWER IN mucosa0.076923
LOWER IN male organism0.076923
LOWER IN duodenum0.076923
LOWER IN jejunum0.076923
LOWER IN luminal content0.076923
Number of experiments associating the term to the sequence
TermScore
duodenum1.000000
jejunum1.000000
luminal content1.000000
LOWER IN mucosa1.000000
rotorua1.000000
postnatal age six weeks1.000000
small intestine1.000000
ovis aries1.000000
premature birth1.000000
new zealand1.000000
colon1.000000
ileum1.000000
female organism1.000000
LOWER IN male organism1.000000
mucosa1.000000
LOWER IN duodenum1.000000
LOWER IN jejunum1.000000
LOWER IN luminal content1.000000
male organism1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1755gpt-5Male lamb samples (all gut sample types) (dominant duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, new zealand, male organism, colon, jejunum, ileum)2025-11-12v31 / 8pendingNo
1755gpt-5Male lamb samples (all gut sample types) (common duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, new zealand, male organism, colon, jejunum, ileum)2025-11-12v31 / 9pendingNo
1755gpt-5All lamb gut microbiome samples from Rotorua, NZ (dominant duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, mucosa, new zealand, colon, jejunum, ileum)2025-11-12v31 / 9pendingNo
1755gpt-5Mucosal scrapings from lambs (combined 'Scraping' spellings) (common rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, mucosa, new zealand, colon, ileum)2025-11-12v31 / 10pendingNo
1755gpt-5Female lamb samples (all gut sample types) (dominant duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, female organism, new zealand, colon, jejunum, ileum)2025-11-12v31 / 10pendingNo
1755gpt-5Mucosal-associated vs luminal gut microbiota in lambs ( high in mucosa compared to duodenum jejunum luminal content in rotorua postnatal age six weeks small intestine ovis aries premature birth new zealand colon ileum )2025-11-12v31 / 10pendingNo
1755gpt-5Luminal content (all gut sites) from lambs (dominant duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, luminal content, new zealand, colon, jejunum, ileum)2025-11-12v31 / 11pendingNo
1755gpt-5Mucosal scrapings from lambs (combined 'Scraping' spellings) (dominant rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, mucosa, new zealand, colon, ileum)2025-11-12v31 / 11pendingNo
1755gpt-5All lamb gut microbiome samples from Rotorua, NZ (common duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, mucosa, new zealand, colon, jejunum, ileum)2025-11-12v31 / 11pendingNo
1755gpt-5Female lamb samples (all gut sample types) (common duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, female organism, new zealand, colon, jejunum, ileum)2025-11-12v31 / 14pendingNo
1755gpt-5Sex-associated differences in lamb gut microbiome (male vs female) ( high in female organism compared to male organism in duodenum rotorua postnatal age six weeks small intestine ovis aries premature birth new zealand colon jejunum ileum )2025-11-12v31 / 16pendingNo
1755gpt-5Luminal content (all gut sites) from lambs (common duodenum, rotorua, postnatal age six weeks, small intestine, , ovis aries, premature birth, luminal content, new zealand, colon, jejunum, ileum)2025-11-12v31 / 20pendingNo
1755gpt-5Mucosal-associated vs luminal gut microbiota in lambs ( high in duodenum jejunum luminal content compared to mucosa in rotorua postnatal age six weeks small intestine ovis aries premature birth new zealand colon ileum )2025-11-12v31 / 502pendingNo

Problems / suggestions? Please visit the dbBact forum