Experiment ID: 1743

Field Description
nameassociation between the microbiomes of tonsil and saliva samples isolated from pediatric patients subjected to tonsillectomy for the treatment of tonsillar hyperplasia (8080726) - gpt-4o-mini-2024-07-18
proj_id8080726
sraprjna615768
date_of_upload12/11/2025 12:28
doi10.1038/s12276-020-00487-6
modelgpt-4o-mini-2024-07-18
dbbact_id679
dbbact_linkhttps://dbbact.org/exp_info/679

Annotations for experiment:

term enrichment score
TermScore
LOWER IN palatine tonsil0.222222
LOWER IN tonsil0.222222
child stage0.166667
palatine tonsil0.133333
tonsil0.133333
LOWER IN oral cavity0.117647
male organism0.058824
female organism0.052632
south korea0.052632
oral cavity0.048780
LOWER IN saliva0.044444
saliva0.014815
homo sapiens0.002591
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN palatine tonsil0.333333
LOWER IN tonsil0.333333
child stage0.090909
LOWER IN oral cavity0.090909
palatine tonsil0.076923
tonsil0.076923
male organism0.030303
female organism0.027027
south korea0.027027
oral cavity0.025641
LOWER IN saliva0.025641
saliva0.007519
homo sapiens0.001297
Fraction of annotations for the query sequences containing the term
TermScore
child stage1.000000
no antibiotic use1.000000
homo sapiens1.000000
female organism1.000000
male organism1.000000
south korea1.000000
saliva material0.500000
saliva0.500000
cheongju city0.500000
oral cavity0.500000
palatine tonsil0.500000
daejeon metropolitan city0.500000
tonsillar tissue0.500000
tonsil0.500000
LOWER IN daejeon metropolitan city0.166667
LOWER IN tonsillar tissue0.166667
LOWER IN palatine tonsil0.166667
LOWER IN tonsil0.166667
LOWER IN saliva material0.166667
LOWER IN saliva0.166667
LOWER IN cheongju city0.166667
LOWER IN oral cavity0.166667
Number of experiments associating the term to the sequence
TermScore
saliva material1.000000
saliva1.000000
cheongju city1.000000
oral cavity1.000000
LOWER IN daejeon metropolitan city1.000000
LOWER IN tonsillar tissue1.000000
LOWER IN palatine tonsil1.000000
LOWER IN tonsil1.000000
child stage1.000000
no antibiotic use1.000000
homo sapiens1.000000
female organism1.000000
male organism1.000000
south korea1.000000
palatine tonsil1.000000
daejeon metropolitan city1.000000
tonsillar tissue1.000000
tonsil1.000000
LOWER IN saliva material1.000000
LOWER IN saliva1.000000
LOWER IN cheongju city1.000000
LOWER IN oral cavity1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1743gpt-4o-mini-2024-07-18Oral Saliva Samples (dominant child stage, no antibiotic use, cheongju city, homo sapiens, saliva, female organism, saliva material, male organism, south korea, oral cavity)2025-11-12v31 / 7pendingNo
1743gpt-4o-mini-2024-07-18Tonsillar Tissue Samples (dominant child stage, no antibiotic use, palatine tonsil, daejeon metropolitan city, homo sapiens, female organism, male organism, south korea, tonsillar tissue, tonsil)2025-11-12v31 / 19pendingNo
1743gpt-4o-mini-2024-07-18Comparison of microbial communities in oral saliva vs tonsillar tissue ( high in daejeon metropolitan city tonsillar tissue palatine tonsil tonsil compared to saliva material saliva cheongju city oral cavity in child stage no antibiotic use homo sapiens female organism male organism south korea )2025-11-12v31 / 42pendingNo
1743gpt-4o-mini-2024-07-18Oral Saliva Samples (common child stage, no antibiotic use, cheongju city, homo sapiens, saliva, female organism, saliva material, male organism, south korea, oral cavity)2025-11-12v31 / 53pendingNo
1743gpt-4o-mini-2024-07-18Tonsillar Tissue Samples (common child stage, no antibiotic use, palatine tonsil, daejeon metropolitan city, homo sapiens, female organism, male organism, south korea, tonsillar tissue, tonsil)2025-11-12v31 / 64pendingNo
1743gpt-4o-mini-2024-07-18Comparison of microbial communities in oral saliva vs tonsillar tissue ( high in saliva material saliva cheongju city oral cavity compared to daejeon metropolitan city tonsillar tissue palatine tonsil tonsil in child stage no antibiotic use homo sapiens female organism male organism south korea )2025-11-12v31 / 400pendingNo

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