Experiment ID: 1633

Field Description
namea lachnospiraceae-dominated bacterial signature in the fecal microbiota of hiv-infected individuals from colombia, south america (5852036) - gpt-5
proj_id5852036
sraprjna408085
date_of_upload09/11/2025 11:43
doi10.1038/s41598-018-22629-7
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
azithromycin0.444444
human immunodeficiency virus infectious disease0.428571
urban biome0.400000
colombia0.285714
ampicillin0.266667
intestine0.062500
human adult stage0.045455
control0.008791
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
azithromycin0.500000
human immunodeficiency virus infectious disease0.333333
urban biome0.250000
ampicillin0.200000
colombia0.166667
intestine0.032258
human adult stage0.023256
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
colombia1.000000
urban biome1.000000
human adult stage1.000000
feces1.000000
homo sapiens1.000000
intestine1.000000
municipality of cartagena de indias0.800000
municipality of barranquilla0.800000
no antibiotic use in last 30 days0.600000
human immunodeficiency virus infectious disease0.600000
no antiretroviral therapy0.600000
control0.400000
azithromycin0.400000
ampicillin0.400000
case group0.400000
Number of experiments associating the term to the sequence
TermScore
control1.000000
colombia1.000000
urban biome1.000000
human adult stage1.000000
feces1.000000
no antibiotic use in last 30 days1.000000
municipality of cartagena de indias1.000000
homo sapiens1.000000
municipality of barranquilla1.000000
intestine1.000000
azithromycin1.000000
ampicillin1.000000
human immunodeficiency virus infectious disease1.000000
case group1.000000
no antiretroviral therapy1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1633models/gemini-1.5-flash-latestCSTOOL series (likely control) fecal samples (dominant control, colombia, urban biome, human adult stage, feces, no antibiotic use in last 30 days, municipality of cartagena de indias, homo sapiens, municipality of barranquilla, intestine)2025-11-09v41 / 21pendingNo
1633models/gemini-1.5-flash-latestVSTOOL series (likely HIV-infected) fecal samples (dominant azithromycin, colombia, urban biome, human adult stage, ampicillin, human immunodeficiency virus infectious disease, feces, case group, municipality of cartagena de indias, homo sapiens, no antiretroviral therapy, municipality of barranquilla, intestine)2025-11-09v41 / 25pendingNo
1633models/gemini-1.5-flash-latestBarranquilla human fecal samples + Cartagena human fecal samples (common colombia, urban biome, human adult stage, feces, human immunodeficiency virus infectious disease, no antibiotic use in last 30 days, intestine, no antiretroviral therapy, homo sapiens)2025-11-09v41 / 104pendingNo
1633models/gemini-1.5-flash-latestVSTOOL series (likely HIV-infected) fecal samples (common azithromycin, colombia, urban biome, human adult stage, ampicillin, human immunodeficiency virus infectious disease, feces, case group, municipality of cartagena de indias, homo sapiens, no antiretroviral therapy, municipality of barranquilla, intestine)2025-11-09v41 / 115pendingNo
1633models/gemini-1.5-flash-latestCSTOOL series (likely control) fecal samples (common control, colombia, urban biome, human adult stage, feces, no antibiotic use in last 30 days, municipality of cartagena de indias, homo sapiens, municipality of barranquilla, intestine)2025-11-09v41 / 124pendingNo

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