Experiment ID: 1632

Field Description
namea lachnospiraceae-dominated bacterial signature in the fecal microbiota of hiv-infected individuals from colombia, south america (5852036) - gpt-5
proj_id5852036
sraprjna408085
date_of_upload09/11/2025 11:39
doi10.1038/s41598-018-22629-7
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
human immunodeficiency virus infectious disease0.444444
urban biome0.400000
azithromycin0.400000
colombia0.285714
ampicillin0.250000
intestine0.062500
human adult stage0.045455
control0.008772
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
azithromycin0.500000
human immunodeficiency virus infectious disease0.333333
urban biome0.250000
ampicillin0.200000
colombia0.166667
intestine0.032258
human adult stage0.023256
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
intestine1.000000
feces1.000000
human adult stage1.000000
urban biome1.000000
homo sapiens1.000000
colombia1.000000
municipality of barranquilla0.666667
municipality of cartagena de indias0.666667
no antibiotic use in last 30 days0.666667
no antiretroviral therapy0.666667
human immunodeficiency virus infectious disease0.666667
control0.333333
azithromycin0.333333
case group0.333333
ampicillin0.333333
Number of experiments associating the term to the sequence
TermScore
municipality of barranquilla1.000000
intestine1.000000
feces1.000000
human adult stage1.000000
control1.000000
urban biome1.000000
municipality of cartagena de indias1.000000
homo sapiens1.000000
no antibiotic use in last 30 days1.000000
colombia1.000000
no antiretroviral therapy1.000000
azithromycin1.000000
human immunodeficiency virus infectious disease1.000000
case group1.000000
ampicillin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1632models/gemini-1.5-flash-latestBarranquilla human fecal samples + Cartagena human fecal samples (dominant intestine, feces, human adult stage, no antiretroviral therapy, human immunodeficiency virus infectious disease, urban biome, homo sapiens, no antibiotic use in last 30 days, colombia)2025-11-09v41 / 19pendingNo
1632models/gemini-1.5-flash-latestCSTOOL series (likely control) fecal samples (dominant municipality of barranquilla, intestine, feces, human adult stage, control, urban biome, municipality of cartagena de indias, homo sapiens, no antibiotic use in last 30 days, colombia)2025-11-09v41 / 21pendingNo
1632models/gemini-1.5-flash-latestVSTOOL series (likely HIV-infected) fecal samples (dominant municipality of barranquilla, intestine, feces, human adult stage, no antiretroviral therapy, azithromycin, human immunodeficiency virus infectious disease, urban biome, municipality of cartagena de indias, homo sapiens, case group, ampicillin, colombia)2025-11-09v41 / 25pendingNo
1632models/gemini-1.5-flash-latestBarranquilla human fecal samples + Cartagena human fecal samples (common intestine, feces, human adult stage, no antiretroviral therapy, human immunodeficiency virus infectious disease, urban biome, homo sapiens, no antibiotic use in last 30 days, colombia)2025-11-09v41 / 104pendingNo
1632models/gemini-1.5-flash-latestVSTOOL series (likely HIV-infected) fecal samples (common municipality of barranquilla, intestine, feces, human adult stage, no antiretroviral therapy, azithromycin, human immunodeficiency virus infectious disease, urban biome, municipality of cartagena de indias, homo sapiens, case group, ampicillin, colombia)2025-11-09v41 / 115pendingNo
1632models/gemini-1.5-flash-latestCSTOOL series (likely control) fecal samples (common municipality of barranquilla, intestine, feces, human adult stage, control, urban biome, municipality of cartagena de indias, homo sapiens, no antibiotic use in last 30 days, colombia)2025-11-09v41 / 124pendingNo

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