Experiment ID: 1618

Field Description
namepopulation structure of human gut bacteria in a diverse cohort from rural tanzania and botswana (6341659) - gpt-4o-mini-2024-07-18
proj_id6341659
sraprjna395034
date_of_upload04/11/2025 16:40
doi10.1186/s13059-018-1616-9
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN kalahari desert1.000000
LOWER IN urban biome1.000000
LOWER IN botswana0.500000
LOWER IN savanna0.500000
LOWER IN tanzania0.500000
botswana0.500000
kalahari desert0.500000
savanna0.333333
LOWER IN human adult stage0.333333
LOWER IN young adult stage0.333333
urban biome0.250000
tanzania0.166667
hunter gatherer0.166667
young adult stage0.111111
LOWER IN united states of america0.083333
human adult stage0.023256
united states of america0.003333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
feces1.000000
human adult stage0.846154
savanna0.461538
tanzania0.461538
botswana0.384615
kalahari desert0.384615
agropastoralist0.230769
young adult stage0.153846
industrial agropastoralist0.153846
united states of america0.153846
urban biome0.153846
pastoralist0.153846
hunter gatherer0.153846
LOWER IN botswana0.076923
LOWER IN kalahari desert0.076923
LOWER IN savanna0.076923
LOWER IN human adult stage0.076923
LOWER IN tanzania0.076923
former hunter-gatherer0.076923
LOWER IN young adult stage0.076923
LOWER IN industrial agropastoralist0.076923
LOWER IN united states of america0.076923
LOWER IN urban biome0.076923
Number of experiments associating the term to the sequence
TermScore
savanna1.000000
tanzania1.000000
LOWER IN botswana1.000000
LOWER IN kalahari desert1.000000
homo sapiens1.000000
human adult stage1.000000
feces1.000000
young adult stage1.000000
industrial agropastoralist1.000000
united states of america1.000000
urban biome1.000000
LOWER IN savanna1.000000
LOWER IN human adult stage1.000000
LOWER IN tanzania1.000000
botswana1.000000
kalahari desert1.000000
former hunter-gatherer1.000000
agropastoralist1.000000
pastoralist1.000000
LOWER IN young adult stage1.000000
LOWER IN industrial agropastoralist1.000000
LOWER IN united states of america1.000000
LOWER IN urban biome1.000000
hunter gatherer1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1618naTanzanian Sandawe Samples (dominant former hunter-gatherer, human adult stage, tanzania, savanna, agropastoralist, homo sapiens, feces)2025-11-04v11 / 13pendingNo
1618naTanzanian Burunge Samples (dominant human adult stage, tanzania, savanna, agropastoralist, homo sapiens, feces)2025-11-04v11 / 13pendingNo
1618naTanzanian Hadza Samples (dominant human adult stage, hunter gatherer, tanzania, savanna, homo sapiens, feces)2025-11-04v11 / 14pendingNo
1618naUS Samples (dominant young adult stage, industrial agropastoralist, homo sapiens, urban biome, united states of america, feces)2025-11-04v11 / 14pendingNo
1618naTanzanian Hadza Samples (dominant human adult stage, tanzania, savanna, homo sapiens, feces)2025-11-04v11 / 14pendingNo
1618naTanzanian Maasai Samples (dominant human adult stage, tanzania, savanna, pastoralist, homo sapiens, feces)2025-11-04v11 / 15pendingNo
1618naBotswanan Bantu Samples (dominant human adult stage, botswana, homo sapiens, kalahari desert, feces)2025-11-04v11 / 15pendingNo
1618naBotswanan San Samples (dominant human adult stage, botswana, hunter gatherer, homo sapiens, kalahari desert, feces)2025-11-04v11 / 16pendingNo
1618naBotswanan Bantu Samples (dominant human adult stage, botswana, agropastoralist, homo sapiens, kalahari desert, feces)2025-11-04v11 / 17pendingNo
1618naBotswanan Herero Samples (dominant human adult stage, botswana, pastoralist, homo sapiens, kalahari desert, feces)2025-11-04v11 / 19pendingNo
1618naBotswanan ethnic groups vs US samples ( high in human adult stage botswana kalahari desert compared to young adult stage industrial agropastoralist united states of america urban biome in homo sapiens feces )2025-11-04v11 / 66pendingNo
1618naBotswanan Bantu Samples (common human adult stage, botswana, homo sapiens, kalahari desert, feces)2025-11-04v11 / 81pendingNo
1618naBotswanan Bantu Samples (common human adult stage, botswana, agropastoralist, homo sapiens, kalahari desert, feces)2025-11-04v11 / 85pendingNo
1618naUS Samples (common young adult stage, industrial agropastoralist, homo sapiens, urban biome, united states of america, feces)2025-11-04v11 / 112pendingNo
1618naBotswanan San Samples (common human adult stage, botswana, hunter gatherer, homo sapiens, kalahari desert, feces)2025-11-04v11 / 116pendingNo
1618naTanzanian Hadza Samples (common human adult stage, hunter gatherer, tanzania, savanna, homo sapiens, feces)2025-11-04v11 / 117pendingNo
1618naBotswanan Herero Samples (common human adult stage, botswana, pastoralist, homo sapiens, kalahari desert, feces)2025-11-04v11 / 118pendingNo
1618naTanzanian Hadza Samples (common human adult stage, tanzania, savanna, homo sapiens, feces)2025-11-04v11 / 125pendingNo
1618naTanzanian ethnic groups vs US samples ( high in savanna human adult stage tanzania compared to young adult stage industrial agropastoralist united states of america urban biome in homo sapiens feces )2025-11-04v11 / 148pendingNo
1618naBotswanan ethnic groups vs US samples ( high in young adult stage industrial agropastoralist united states of america urban biome compared to human adult stage botswana kalahari desert in homo sapiens feces )2025-11-04v11 / 167pendingNo
1618naTanzanian Maasai Samples (common human adult stage, tanzania, savanna, pastoralist, homo sapiens, feces)2025-11-04v11 / 177pendingNo
1618naTanzanian Burunge Samples (common human adult stage, tanzania, savanna, agropastoralist, homo sapiens, feces)2025-11-04v11 / 184pendingNo
1618naTanzanian Sandawe Samples (common former hunter-gatherer, human adult stage, tanzania, savanna, agropastoralist, homo sapiens, feces)2025-11-04v11 / 207pendingNo
1618naTanzanian vs Botswanan fecal microbiota ( high in botswana kalahari desert compared to savanna tanzania in homo sapiens human adult stage feces )2025-11-04v11 / 253pendingNo
1618naTanzanian ethnic groups vs US samples ( high in young adult stage industrial agropastoralist united states of america urban biome compared to savanna human adult stage tanzania in homo sapiens feces )2025-11-04v11 / 292pendingNo
1618naTanzanian vs Botswanan fecal microbiota ( high in savanna tanzania compared to botswana kalahari desert in homo sapiens human adult stage feces )2025-11-04v11 / 324pendingNo

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