Experiment ID: 1613

Field Description
namea lachnospiraceae-dominated bacterial signature in the fecal microbiota of hiv-infected individuals from colombia, south america (5852036) - gpt-5
proj_id5852036
sraprjna408085
date_of_upload04/11/2025 16:23
doi10.1038/s41598-018-22629-7
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
human immunodeficiency virus infectious disease0.470588
urban biome0.400000
azithromycin0.285714
colombia0.285714
ampicillin0.200000
intestine0.062500
human adult stage0.045455
control0.008696
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
azithromycin0.500000
human immunodeficiency virus infectious disease0.333333
urban biome0.250000
ampicillin0.200000
colombia0.166667
intestine0.032258
human adult stage0.023256
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
human adult stage1.000000
homo sapiens1.000000
feces1.000000
colombia1.000000
urban biome1.000000
intestine1.000000
no antibiotic use in last 30 days0.800000
no antiretroviral therapy0.800000
human immunodeficiency virus infectious disease0.800000
municipality of barranquilla0.600000
municipality of cartagena de indias0.600000
control0.200000
azithromycin0.200000
case group0.200000
ampicillin0.200000
Number of experiments associating the term to the sequence
TermScore
no antibiotic use in last 30 days1.000000
municipality of barranquilla1.000000
human adult stage1.000000
homo sapiens1.000000
feces1.000000
municipality of cartagena de indias1.000000
colombia1.000000
urban biome1.000000
control1.000000
intestine1.000000
no antiretroviral therapy1.000000
human immunodeficiency virus infectious disease1.000000
azithromycin1.000000
case group1.000000
ampicillin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1613naBarranquilla human fecal samples (dominant urban biome, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, colombia, no antibiotic use in last 30 days, intestine)2025-11-04v41 / 19pendingNo
1613naCartagena human fecal samples (dominant urban biome, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, municipality of cartagena de indias, colombia, no antibiotic use in last 30 days, intestine)2025-11-04v41 / 20pendingNo
1613naBarranquilla human fecal samples (dominant urban biome, municipality of barranquilla, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, colombia, no antibiotic use in last 30 days, intestine)2025-11-04v41 / 21pendingNo
1613naCSTOOL series (likely control) fecal samples (dominant no antibiotic use in last 30 days, municipality of barranquilla, human adult stage, homo sapiens, feces, municipality of cartagena de indias, colombia, urban biome, control, intestine)2025-11-04v41 / 21pendingNo
1613naVSTOOL series (likely HIV-infected) fecal samples (dominant azithromycin, case group, municipality of barranquilla, ampicillin, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, municipality of cartagena de indias, colombia, urban biome, intestine)2025-11-04v41 / 25pendingNo
1613naCartagena human fecal samples (common urban biome, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, municipality of cartagena de indias, colombia, no antibiotic use in last 30 days, intestine)2025-11-04v41 / 104pendingNo
1613naBarranquilla human fecal samples (common urban biome, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, colombia, no antibiotic use in last 30 days, intestine)2025-11-04v41 / 104pendingNo
1613naVSTOOL series (likely HIV-infected) fecal samples (common azithromycin, case group, municipality of barranquilla, ampicillin, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, municipality of cartagena de indias, colombia, urban biome, intestine)2025-11-04v41 / 115pendingNo
1613naBarranquilla human fecal samples (common urban biome, municipality of barranquilla, no antiretroviral therapy, human immunodeficiency virus infectious disease, human adult stage, homo sapiens, feces, colombia, no antibiotic use in last 30 days, intestine)2025-11-04v41 / 122pendingNo
1613naCSTOOL series (likely control) fecal samples (common no antibiotic use in last 30 days, municipality of barranquilla, human adult stage, homo sapiens, feces, municipality of cartagena de indias, colombia, urban biome, control, intestine)2025-11-04v41 / 124pendingNo

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