Experiment ID: 1612

Field Description
namea lachnospiraceae-dominated bacterial signature in the fecal microbiota of hiv-infected individuals from colombia, south america (5852036) - gpt-5
proj_id5852036
sraprjna408085
date_of_upload04/11/2025 16:05
doi10.1038/s41598-018-22629-7
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
human immunodeficiency virus infectious disease0.320000
urban biome0.250000
azithromycin0.250000
colombia0.166667
ampicillin0.142857
intestine0.032258
human adult stage0.023256
control0.004405
homo sapiens0.002591
feces0.002294
Fraction of dbbact annotations with this term covered by the query
TermScore
azithromycin0.333333
human immunodeficiency virus infectious disease0.200000
urban biome0.142857
ampicillin0.111111
colombia0.090909
intestine0.016393
human adult stage0.011765
control0.002227
homo sapiens0.001297
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
urban biome1.000000
intestine1.000000
homo sapiens1.000000
human adult stage1.000000
feces1.000000
colombia1.000000
no antibiotic use in last 30 days0.800000
human immunodeficiency virus infectious disease0.800000
no antiretroviral therapy0.800000
municipality of barranquilla0.600000
municipality of cartagena de indias0.600000
control0.200000
ampicillin0.200000
azithromycin0.200000
case group0.200000
Number of experiments associating the term to the sequence
TermScore
urban biome1.000000
intestine1.000000
homo sapiens1.000000
human adult stage1.000000
feces1.000000
no antibiotic use in last 30 days1.000000
control1.000000
colombia1.000000
municipality of barranquilla1.000000
municipality of cartagena de indias1.000000
human immunodeficiency virus infectious disease1.000000
no antiretroviral therapy1.000000
ampicillin1.000000
azithromycin1.000000
case group1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1612naBarranquilla human fecal samples (dominant urban biome, intestine, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, no antibiotic use in last 30 days, no antiretroviral therapy, colombia)2025-11-04v41 / 19pendingNo
1612naCartagena human fecal samples (dominant urban biome, intestine, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, no antibiotic use in last 30 days, no antiretroviral therapy, colombia, municipality of cartagena de indias)2025-11-04v41 / 20pendingNo
1612naBarranquilla human fecal samples (dominant urban biome, intestine, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, no antibiotic use in last 30 days, no antiretroviral therapy, colombia, municipality of barranquilla)2025-11-04v41 / 21pendingNo
1612naCSTOOL series (likely control) fecal samples (dominant urban biome, intestine, homo sapiens, human adult stage, feces, no antibiotic use in last 30 days, control, colombia, municipality of barranquilla, municipality of cartagena de indias)2025-11-04v41 / 21pendingNo
1612naVSTOOL series (likely HIV-infected) fecal samples (dominant urban biome, intestine, ampicillin, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, azithromycin, case group, no antiretroviral therapy, colombia, municipality of barranquilla, municipality of cartagena de indias)2025-11-04v41 / 25pendingNo
1612naCartagena human fecal samples (common urban biome, intestine, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, no antibiotic use in last 30 days, no antiretroviral therapy, colombia, municipality of cartagena de indias)2025-11-04v41 / 104pendingNo
1612naBarranquilla human fecal samples (common urban biome, intestine, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, no antibiotic use in last 30 days, no antiretroviral therapy, colombia)2025-11-04v41 / 104pendingNo
1612naVSTOOL series (likely HIV-infected) fecal samples (common urban biome, intestine, ampicillin, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, azithromycin, case group, no antiretroviral therapy, colombia, municipality of barranquilla, municipality of cartagena de indias)2025-11-04v41 / 115pendingNo
1612naBarranquilla human fecal samples (common urban biome, intestine, homo sapiens, human adult stage, human immunodeficiency virus infectious disease, feces, no antibiotic use in last 30 days, no antiretroviral therapy, colombia, municipality of barranquilla)2025-11-04v41 / 122pendingNo
1612naCSTOOL series (likely control) fecal samples (common urban biome, intestine, homo sapiens, human adult stage, feces, no antibiotic use in last 30 days, control, colombia, municipality of barranquilla, municipality of cartagena de indias)2025-11-04v41 / 124pendingNo

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