Experiment ID: 1549

Field Description
nameassociation between the microbiomes of tonsil and saliva samples isolated from pediatric patients subjected to tonsillectomy for the treatment of tonsillar hyperplasia (8080726) - gpt-4o-mini-2024-07-18
proj_id8080726
sraprjna615768
date_of_upload30/10/2025 14:25
doi10.1038/s12276-020-00487-6
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
child stage0.285714
LOWER IN tonsil0.250000
LOWER IN palatine tonsil0.250000
tonsil0.222222
palatine tonsil0.222222
LOWER IN oral cavity0.166667
male organism0.111111
female organism0.100000
south korea0.100000
oral cavity0.090909
LOWER IN saliva0.076923
saliva0.028986
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN tonsil0.500000
LOWER IN palatine tonsil0.500000
child stage0.166667
LOWER IN oral cavity0.166667
tonsil0.142857
palatine tonsil0.142857
male organism0.058824
female organism0.052632
south korea0.052632
oral cavity0.050000
LOWER IN saliva0.050000
saliva0.014925
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
female organism1.000000
child stage1.000000
male organism1.000000
south korea1.000000
no antibiotic use1.000000
homo sapiens1.000000
cheongju city0.500000
saliva0.500000
saliva material0.500000
oral cavity0.500000
daejeon metropolitan city0.500000
tonsillar tissue0.500000
tonsil0.500000
palatine tonsil0.500000
LOWER IN tonsil0.166667
LOWER IN palatine tonsil0.166667
LOWER IN daejeon metropolitan city0.166667
LOWER IN tonsillar tissue0.166667
LOWER IN cheongju city0.166667
LOWER IN saliva0.166667
LOWER IN saliva material0.166667
LOWER IN oral cavity0.166667
Number of experiments associating the term to the sequence
TermScore
cheongju city1.000000
saliva1.000000
saliva material1.000000
oral cavity1.000000
LOWER IN tonsil1.000000
LOWER IN palatine tonsil1.000000
LOWER IN daejeon metropolitan city1.000000
LOWER IN tonsillar tissue1.000000
female organism1.000000
child stage1.000000
male organism1.000000
south korea1.000000
no antibiotic use1.000000
homo sapiens1.000000
daejeon metropolitan city1.000000
tonsillar tissue1.000000
tonsil1.000000
palatine tonsil1.000000
LOWER IN cheongju city1.000000
LOWER IN saliva1.000000
LOWER IN saliva material1.000000
LOWER IN oral cavity1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1549naOral Saliva Samples (dominant female organism, cheongju city, oral cavity, child stage, male organism, homo sapiens, south korea, saliva material, no antibiotic use, saliva)2025-10-30v31 / 7pendingNo
1549naTonsillar Tissue Samples (dominant female organism, daejeon metropolitan city, child stage, male organism, tonsillar tissue, south korea, tonsil, homo sapiens, palatine tonsil, no antibiotic use)2025-10-30v31 / 19pendingNo
1549naComparison of microbial communities in oral saliva vs tonsillar tissue ( high in tonsil palatine tonsil daejeon metropolitan city tonsillar tissue compared to cheongju city saliva saliva material oral cavity in female organism child stage male organism south korea no antibiotic use homo sapiens )2025-10-30v31 / 40pendingNo
1549naOral Saliva Samples (common female organism, cheongju city, oral cavity, child stage, male organism, homo sapiens, south korea, saliva material, no antibiotic use, saliva)2025-10-30v31 / 53pendingNo
1549naTonsillar Tissue Samples (common female organism, daejeon metropolitan city, child stage, male organism, tonsillar tissue, south korea, tonsil, homo sapiens, palatine tonsil, no antibiotic use)2025-10-30v31 / 64pendingNo
1549naComparison of microbial communities in oral saliva vs tonsillar tissue ( high in cheongju city saliva saliva material oral cavity compared to tonsil palatine tonsil daejeon metropolitan city tonsillar tissue in female organism child stage male organism south korea no antibiotic use homo sapiens )2025-10-30v31 / 382pendingNo

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