Experiment ID: 1548

Field Description
namegut microbiota of endangered crested ibis: establishment, diversity, and association with reproductive output (8064547) - gpt-4o-mini-2024-07-18
proj_id8064547
sraprjna576538
date_of_upload30/10/2025 14:24
doi10.1371/journal.pone.0250075
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
nipponia nippon0.666667
deqing county0.666667
child stage0.210526
zhejiang province0.181818
cloaca0.164557
young adult stage0.146341
newborn human stage0.117647
5-year-old human stage0.117647
infant stage0.117647
3-year-old human stage0.105263
male organism0.097561
female organism0.088889
2-year-old human stage0.083333
1-year-old human stage0.068966
LOWER IN human adult stage0.064516
LOWER IN cloaca0.064516
captive0.058559
LOWER IN captive0.055556
human adult stage0.042553
LOWER IN feces0.034483
china0.009390
feces0.004568
Fraction of dbbact annotations with this term covered by the query
TermScore
nipponia nippon0.500000
deqing county0.500000
newborn human stage0.333333
5-year-old human stage0.333333
LOWER IN human adult stage0.333333
LOWER IN cloaca0.333333
infant stage0.333333
3-year-old human stage0.200000
child stage0.166667
LOWER IN captive0.125000
young adult stage0.111111
zhejiang province0.100000
cloaca0.100000
2-year-old human stage0.100000
1-year-old human stage0.066667
male organism0.058824
female organism0.052632
LOWER IN feces0.033333
captive0.031250
human adult stage0.023256
china0.004717
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
china1.000000
nipponia nippon1.000000
deqing county1.000000
zhejiang province1.000000
feces0.535714
captive0.464286
cloaca0.464286
male organism0.285714
female organism0.285714
child stage0.285714
brooding room0.285714
human adult stage0.250000
young adult stage0.214286
sterility0.071429
newborn human stage0.071429
artificial incubator0.071429
5-year-old human stage0.071429
1-year-old human stage0.071429
3-year-old human stage0.071429
2-year-old human stage0.071429
outdoor artificial cage0.071429
infant stage0.071429
LOWER IN feces0.035714
LOWER IN captive0.035714
LOWER IN human adult stage0.035714
LOWER IN cloaca0.035714
Number of experiments associating the term to the sequence
TermScore
china1.000000
captive1.000000
human adult stage1.000000
sterility1.000000
nipponia nippon1.000000
deqing county1.000000
zhejiang province1.000000
cloaca1.000000
newborn human stage1.000000
feces1.000000
artificial incubator1.000000
LOWER IN feces1.000000
5-year-old human stage1.000000
male organism1.000000
female organism1.000000
1-year-old human stage1.000000
young adult stage1.000000
3-year-old human stage1.000000
2-year-old human stage1.000000
child stage1.000000
brooding room1.000000
outdoor artificial cage1.000000
LOWER IN captive1.000000
LOWER IN human adult stage1.000000
LOWER IN cloaca1.000000
infant stage1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1548naNestling Samples at 36 Days Old (dominant child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 12pendingNo
1548naNestling Samples at 18 Days Old (dominant child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 13pendingNo
1548naNestling Samples at 27 Days Old (dominant child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 13pendingNo
1548naNestling Samples at 45 Days Old (dominant child stage, china, outdoor artificial cage, feces, nipponia nippon, deqing county, zhejiang province)2025-10-30v41 / 14pendingNo
1548naNestling Samples at 1 Day Old (dominant newborn human stage, china, feces, nipponia nippon, deqing county, artificial incubator, zhejiang province)2025-10-30v41 / 15pendingNo
1548naAdult Samples at 2 Years Old (dominant china, 2-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 15pendingNo
1548naAdult Samples at 3 Years Old (dominant 3-year-old human stage, china, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 15pendingNo
1548naAdult Samples at 1 Year Old (dominant china, 1-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 17pendingNo
1548naNestling Samples at 9 Days Old (dominant infant stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 18pendingNo
1548naNestling Samples at 1 Day Old (dominant china, nipponia nippon, feces, deqing county, zhejiang province)2025-10-30v41 / 19pendingNo
1548naNormal Adult Samples (dominant china, captive, human adult stage, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 20pendingNo
1548naAdult Samples at 5 Years Old (dominant china, captive, human adult stage, nipponia nippon, 5-year-old human stage, deqing county, male organism, female organism, zhejiang province, cloaca)2025-10-30v41 / 22pendingNo
1548naSterile Adult Samples (dominant china, captive, human adult stage, sterility, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 26pendingNo
1548naNestling Samples at 1 Day Old (common china, nipponia nippon, feces, deqing county, zhejiang province)2025-10-30v41 / 59pendingNo
1548naNestling Samples at 9 Days Old (common infant stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 69pendingNo
1548naNestling vs Adult microbiome ( high in feces compared to captive human adult stage cloaca in deqing county nipponia nippon zhejiang province china )2025-10-30v41 / 71pendingNo
1548naNestling Samples at 45 Days Old (common child stage, china, outdoor artificial cage, feces, nipponia nippon, deqing county, zhejiang province)2025-10-30v41 / 75pendingNo
1548naNestling Samples at 18 Days Old (common child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 82pendingNo
1548naNestling Samples at 27 Days Old (common child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 82pendingNo
1548naNestling Samples at 36 Days Old (common child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 85pendingNo
1548naAdult Samples at 2 Years Old (common china, 2-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 115pendingNo
1548naNormal Adult Samples (common china, captive, human adult stage, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 116pendingNo
1548naAdult Samples at 3 Years Old (common 3-year-old human stage, china, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 117pendingNo
1548naAdult Samples at 1 Year Old (common china, 1-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 136pendingNo
1548naAdult Samples at 5 Years Old (common china, captive, human adult stage, nipponia nippon, 5-year-old human stage, deqing county, male organism, female organism, zhejiang province, cloaca)2025-10-30v41 / 159pendingNo
1548naNestling vs Adult microbiome ( high in captive human adult stage cloaca compared to feces in deqing county nipponia nippon zhejiang province china )2025-10-30v41 / 193pendingNo
1548naNestling Samples at 1 Day Old (common newborn human stage, china, feces, nipponia nippon, deqing county, artificial incubator, zhejiang province)2025-10-30v41 / 208pendingNo
1548naSterile Adult Samples (common china, captive, human adult stage, sterility, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 248pendingNo

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