Experiment ID: 1548

Field Description
namegut microbiota of endangered crested ibis: establishment, diversity, and association with reproductive output (8064547) - gpt-4o-mini-2024-07-18
proj_id8064547
sraprjna576538
date_of_upload30/10/2025 14:24
doi10.1371/journal.pone.0250075
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
nipponia nippon0.500000
deqing county0.500000
child stage0.137931
newborn human stage0.105263
5-year-old human stage0.105263
infant stage0.105263
zhejiang province0.100000
cloaca0.094545
young adult stage0.092308
3-year-old human stage0.086957
2-year-old human stage0.060606
LOWER IN human adult stage0.060606
LOWER IN cloaca0.060606
male organism0.054795
female organism0.049383
1-year-old human stage0.046512
LOWER IN captive0.046512
captive0.030697
LOWER IN feces0.022989
human adult stage0.022472
china0.004717
feces0.002291
Fraction of dbbact annotations with this term covered by the query
TermScore
nipponia nippon0.333333
deqing county0.333333
newborn human stage0.200000
5-year-old human stage0.200000
LOWER IN human adult stage0.200000
LOWER IN cloaca0.200000
infant stage0.200000
3-year-old human stage0.111111
child stage0.090909
LOWER IN captive0.066667
young adult stage0.058824
zhejiang province0.052632
cloaca0.052632
2-year-old human stage0.052632
1-year-old human stage0.034483
male organism0.030303
female organism0.027027
LOWER IN feces0.016949
captive0.015873
human adult stage0.011765
china0.002364
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
china1.000000
nipponia nippon1.000000
deqing county1.000000
zhejiang province1.000000
feces0.535714
captive0.464286
cloaca0.464286
male organism0.285714
female organism0.285714
child stage0.285714
brooding room0.285714
human adult stage0.250000
young adult stage0.214286
sterility0.071429
newborn human stage0.071429
artificial incubator0.071429
5-year-old human stage0.071429
1-year-old human stage0.071429
3-year-old human stage0.071429
2-year-old human stage0.071429
outdoor artificial cage0.071429
infant stage0.071429
LOWER IN feces0.035714
LOWER IN captive0.035714
LOWER IN human adult stage0.035714
LOWER IN cloaca0.035714
Number of experiments associating the term to the sequence
TermScore
china1.000000
captive1.000000
human adult stage1.000000
sterility1.000000
nipponia nippon1.000000
deqing county1.000000
zhejiang province1.000000
cloaca1.000000
newborn human stage1.000000
feces1.000000
artificial incubator1.000000
LOWER IN feces1.000000
5-year-old human stage1.000000
male organism1.000000
female organism1.000000
1-year-old human stage1.000000
young adult stage1.000000
3-year-old human stage1.000000
2-year-old human stage1.000000
child stage1.000000
brooding room1.000000
outdoor artificial cage1.000000
LOWER IN captive1.000000
LOWER IN human adult stage1.000000
LOWER IN cloaca1.000000
infant stage1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1548naNestling Samples at 36 Days Old (dominant child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 12pendingNo
1548naNestling Samples at 18 Days Old (dominant child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 13pendingNo
1548naNestling Samples at 27 Days Old (dominant child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 13pendingNo
1548naNestling Samples at 45 Days Old (dominant child stage, china, outdoor artificial cage, feces, nipponia nippon, deqing county, zhejiang province)2025-10-30v41 / 14pendingNo
1548naNestling Samples at 1 Day Old (dominant newborn human stage, china, feces, nipponia nippon, deqing county, artificial incubator, zhejiang province)2025-10-30v41 / 15pendingNo
1548naAdult Samples at 2 Years Old (dominant china, 2-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 15pendingNo
1548naAdult Samples at 3 Years Old (dominant 3-year-old human stage, china, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 15pendingNo
1548naAdult Samples at 1 Year Old (dominant china, 1-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 17pendingNo
1548naNestling Samples at 9 Days Old (dominant infant stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 18pendingNo
1548naNestling Samples at 1 Day Old (dominant china, nipponia nippon, feces, deqing county, zhejiang province)2025-10-30v41 / 19pendingNo
1548naNormal Adult Samples (dominant china, captive, human adult stage, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 20pendingNo
1548naAdult Samples at 5 Years Old (dominant china, captive, human adult stage, nipponia nippon, 5-year-old human stage, deqing county, male organism, female organism, zhejiang province, cloaca)2025-10-30v41 / 22pendingNo
1548naSterile Adult Samples (dominant china, captive, human adult stage, sterility, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 26pendingNo
1548naNestling Samples at 1 Day Old (common china, nipponia nippon, feces, deqing county, zhejiang province)2025-10-30v41 / 59pendingNo
1548naNestling Samples at 9 Days Old (common infant stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 69pendingNo
1548naNestling vs Adult microbiome ( high in feces compared to captive human adult stage cloaca in deqing county nipponia nippon zhejiang province china )2025-10-30v41 / 71pendingNo
1548naNestling Samples at 45 Days Old (common child stage, china, outdoor artificial cage, feces, nipponia nippon, deqing county, zhejiang province)2025-10-30v41 / 75pendingNo
1548naNestling Samples at 18 Days Old (common child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 82pendingNo
1548naNestling Samples at 27 Days Old (common child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 82pendingNo
1548naNestling Samples at 36 Days Old (common child stage, china, feces, nipponia nippon, deqing county, brooding room, zhejiang province)2025-10-30v41 / 85pendingNo
1548naAdult Samples at 2 Years Old (common china, 2-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 115pendingNo
1548naNormal Adult Samples (common china, captive, human adult stage, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 116pendingNo
1548naAdult Samples at 3 Years Old (common 3-year-old human stage, china, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 117pendingNo
1548naAdult Samples at 1 Year Old (common china, 1-year-old human stage, captive, nipponia nippon, male organism, female organism, deqing county, young adult stage, zhejiang province, cloaca)2025-10-30v41 / 136pendingNo
1548naAdult Samples at 5 Years Old (common china, captive, human adult stage, nipponia nippon, 5-year-old human stage, deqing county, male organism, female organism, zhejiang province, cloaca)2025-10-30v41 / 159pendingNo
1548naNestling vs Adult microbiome ( high in captive human adult stage cloaca compared to feces in deqing county nipponia nippon zhejiang province china )2025-10-30v41 / 193pendingNo
1548naNestling Samples at 1 Day Old (common newborn human stage, china, feces, nipponia nippon, deqing county, artificial incubator, zhejiang province)2025-10-30v41 / 208pendingNo
1548naSterile Adult Samples (common china, captive, human adult stage, sterility, nipponia nippon, deqing county, zhejiang province, cloaca)2025-10-30v41 / 248pendingNo

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