Experiment ID: 1545

Field Description
namecharacterization of rumen microbiota of two sheep breeds supplemented with direct-fed lactic acid bacteria (7843511) - gpt-4o-mini-2024-07-18
proj_id7843511
sraprjna578022
date_of_upload30/10/2025 14:23
doi10.3389/fvets.2020.570074
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
south africa0.166667
antimicrobial agent0.166667
ovis aries0.111111
male organism0.095238
female organism0.086957
LOWER IN male organism0.076923
rumen0.071429
LOWER IN female organism0.068966
control0.008511
Fraction of dbbact annotations with this term covered by the query
TermScore
antimicrobial agent0.500000
LOWER IN male organism0.166667
LOWER IN female organism0.111111
south africa0.090909
male organism0.058824
ovis aries0.058824
female organism0.052632
rumen0.037037
control0.004444
Fraction of annotations for the query sequences containing the term
TermScore
rumen1.000000
city of irene1.000000
rumen epithelium1.000000
rumen contents1.000000
ovis aries1.000000
south africa1.000000
republic of south africa1.000000
lactobacillus rhamnosus0.300000
male organism0.250000
female organism0.250000
lactobacillus rhamnosus gg0.200000
antibiotic use0.100000
antimicrobial agent0.100000
control0.100000
LOWER IN female organism0.050000
LOWER IN male organism0.050000
Number of experiments associating the term to the sequence
TermScore
rumen1.000000
city of irene1.000000
male organism1.000000
rumen epithelium1.000000
rumen contents1.000000
ovis aries1.000000
south africa1.000000
republic of south africa1.000000
female organism1.000000
lactobacillus rhamnosus1.000000
antibiotic use1.000000
antimicrobial agent1.000000
lactobacillus rhamnosus gg1.000000
control1.000000
LOWER IN female organism1.000000
LOWER IN male organism1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1545naDamara Female Rumen Samples (dominant rumen, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa, female organism)2025-10-30v31 / 3pendingNo
1545naAntibiotic Treated Rumen Samples (dominant rumen, city of irene, republic of south africa, antibiotic use, antimicrobial agent, rumen epithelium, ovis aries, south africa, rumen contents)2025-10-30v31 / 3pendingNo
1545naMeatmaster Female Rumen Samples (dominant rumen, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa, female organism)2025-10-30v31 / 5pendingNo
1545naCombination Probiotic Rumen Samples (dominant lactobacillus rhamnosus, rumen, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 5pendingNo
1545naSingle Probiotic SCH Rumen Samples (dominant lactobacillus rhamnosus, rumen, city of irene, lactobacillus rhamnosus gg, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 5pendingNo
1545naSingle Probiotic AF3G Rumen Samples (dominant lactobacillus rhamnosus, rumen, city of irene, lactobacillus rhamnosus gg, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 6pendingNo
1545naNegative Control Rumen Samples (dominant rumen, control, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 6pendingNo
1545naMeatmaster Male Rumen Samples (dominant rumen, city of irene, male organism, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 7pendingNo
1545naDamara Male Rumen Samples (dominant rumen, city of irene, male organism, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 8pendingNo
1545naRumen microbiota in male vs female Meatmaster sheep ( high in female organism compared to male organism in rumen city of irene rumen epithelium rumen contents ovis aries south africa republic of south africa )2025-10-30v31 / 223pendingNo
1545naRumen microbiota in male vs female Meatmaster sheep ( high in male organism compared to female organism in rumen city of irene rumen epithelium rumen contents ovis aries south africa republic of south africa )2025-10-30v31 / 224pendingNo
1545naNegative Control Rumen Samples (common rumen, control, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 415pendingNo
1545naSingle Probiotic AF3G Rumen Samples (common lactobacillus rhamnosus, rumen, city of irene, lactobacillus rhamnosus gg, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 472pendingNo
1545naMeatmaster Male Rumen Samples (common rumen, city of irene, male organism, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 537pendingNo
1545naMeatmaster Female Rumen Samples (common rumen, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa, female organism)2025-10-30v31 / 551pendingNo
1545naSingle Probiotic SCH Rumen Samples (common lactobacillus rhamnosus, rumen, city of irene, lactobacillus rhamnosus gg, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 553pendingNo
1545naAntibiotic Treated Rumen Samples (common rumen, city of irene, republic of south africa, antibiotic use, antimicrobial agent, rumen epithelium, ovis aries, south africa, rumen contents)2025-10-30v31 / 620pendingNo
1545naCombination Probiotic Rumen Samples (common lactobacillus rhamnosus, rumen, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 644pendingNo
1545naDamara Female Rumen Samples (common rumen, city of irene, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa, female organism)2025-10-30v31 / 657pendingNo
1545naDamara Male Rumen Samples (common rumen, city of irene, male organism, rumen epithelium, rumen contents, ovis aries, south africa, republic of south africa)2025-10-30v31 / 675pendingNo

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