Experiment ID: 1524

Field Description
namemicrobial composition predicts genital tract inflammation and persistent bacterial vaginosis in south african adolescent females (5736802) - gpt-4o-mini-2024-07-18
proj_id5736802
sraprjeb15497
date_of_upload30/10/2025 14:18
doi10.1128/iai.00410-17
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
20-year-old human stage0.666667
south africa0.166667
adolescent stage0.142857
vagina0.117647
female organism0.100000
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
20-year-old human stage0.500000
south africa0.090909
adolescent stage0.076923
vagina0.062500
female organism0.052632
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
hormonal contraception use1.000000
16-year-old human stage1.000000
cape town1.000000
homo sapiens1.000000
vagina1.000000
18-year-old human stage1.000000
south africa1.000000
20-year-old human stage1.000000
hiv-negative1.000000
21-year-old human stage1.000000
19-year-old human stage1.000000
22-year-old human stage1.000000
republic of south africa1.000000
female organism1.000000
vaginal fluid1.000000
adolescent stage1.000000
17-year-old human stage1.000000
low inflammation0.500000
high inflammation0.500000
LOWER IN high inflammation0.166667
LOWER IN low inflammation0.166667
Exp. ID User ID Description Date Region Sequences Status Flag
1524naLow Inflammation Microbiota Samples (dominant hormonal contraception use, 16-year-old human stage, cape town, homo sapiens, vagina, 18-year-old human stage, south africa, 20-year-old human stage, hiv-negative, 21-year-old human stage, 19-year-old human stage, 22-year-old human stage, republic of south africa, low inflammation, female organism, vaginal fluid, adolescent stage, 17-year-old human stage)2025-10-30v41 / 13pendingNo
1524naHigh Inflammation Microbiota Samples (dominant hormonal contraception use, 16-year-old human stage, cape town, homo sapiens, vagina, 18-year-old human stage, south africa, 20-year-old human stage, high inflammation, 21-year-old human stage, hiv-negative, 19-year-old human stage, 22-year-old human stage, republic of south africa, female organism, vaginal fluid, adolescent stage, 17-year-old human stage)2025-10-30v41 / 17pendingNo
1524naLow Inflammation Microbiota Samples (common hormonal contraception use, 16-year-old human stage, cape town, homo sapiens, vagina, 18-year-old human stage, south africa, 20-year-old human stage, hiv-negative, 21-year-old human stage, 19-year-old human stage, 22-year-old human stage, republic of south africa, low inflammation, female organism, vaginal fluid, adolescent stage, 17-year-old human stage)2025-10-30v41 / 51pendingNo
1524naHigh Inflammation Microbiota Samples (common hormonal contraception use, 16-year-old human stage, cape town, homo sapiens, vagina, 18-year-old human stage, south africa, 20-year-old human stage, high inflammation, 21-year-old human stage, hiv-negative, 19-year-old human stage, 22-year-old human stage, republic of south africa, female organism, vaginal fluid, adolescent stage, 17-year-old human stage)2025-10-30v41 / 56pendingNo
1524naHigh vs Low Inflammation Microbiota in Vaginal Samples ( high in high inflammation compared to low inflammation in hormonal contraception use 16-year-old human stage cape town homo sapiens vagina 18-year-old human stage south africa 20-year-old human stage hiv-negative 21-year-old human stage 19-year-old human stage 22-year-old human stage republic of south africa female organism vaginal fluid adolescent stage 17-year-old human stage )2025-10-30v41 / 57pendingNo
1524naHigh vs Low Inflammation Microbiota in Vaginal Samples ( high in low inflammation compared to high inflammation in hormonal contraception use 16-year-old human stage cape town homo sapiens vagina 18-year-old human stage south africa 20-year-old human stage hiv-negative 21-year-old human stage 19-year-old human stage 22-year-old human stage republic of south africa female organism vaginal fluid adolescent stage 17-year-old human stage )2025-10-30v41 / 222pendingNo

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