Experiment ID: 1485

Field Description
namegut microbiota of endangered crested ibis: establishment, diversity, and association with reproductive output (8064547) - gpt-4o-mini-2024-07-18
proj_id8064547
sraprjna576538
date_of_upload30/10/2025 14:00
doi10.1371/journal.pone.0250075
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
nipponia nippon0.666667
deqing county0.666667
child stage0.210526
zhejiang province0.181818
cloaca0.164557
young adult stage0.146341
newborn human stage0.117647
5-year-old human stage0.117647
infant stage0.117647
3-year-old human stage0.105263
male organism0.097561
female organism0.088889
2-year-old human stage0.083333
1-year-old human stage0.068966
LOWER IN human adult stage0.064516
LOWER IN cloaca0.064516
captive0.058559
LOWER IN captive0.055556
human adult stage0.042553
LOWER IN feces0.034483
china0.009390
feces0.004568
Fraction of dbbact annotations with this term covered by the query
TermScore
nipponia nippon0.500000
deqing county0.500000
newborn human stage0.333333
5-year-old human stage0.333333
infant stage0.333333
LOWER IN human adult stage0.333333
LOWER IN cloaca0.333333
3-year-old human stage0.200000
child stage0.166667
LOWER IN captive0.125000
young adult stage0.111111
zhejiang province0.100000
cloaca0.100000
2-year-old human stage0.100000
1-year-old human stage0.066667
male organism0.058824
female organism0.052632
LOWER IN feces0.033333
captive0.031250
human adult stage0.023256
china0.004717
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
china1.000000
zhejiang province1.000000
nipponia nippon1.000000
deqing county1.000000
feces0.535714
captive0.464286
cloaca0.464286
female organism0.285714
male organism0.285714
brooding room0.285714
child stage0.285714
human adult stage0.250000
young adult stage0.214286
sterility0.071429
artificial incubator0.071429
newborn human stage0.071429
5-year-old human stage0.071429
1-year-old human stage0.071429
3-year-old human stage0.071429
2-year-old human stage0.071429
outdoor artificial cage0.071429
infant stage0.071429
LOWER IN feces0.035714
LOWER IN human adult stage0.035714
LOWER IN captive0.035714
LOWER IN cloaca0.035714
Number of experiments associating the term to the sequence
TermScore
china1.000000
captive1.000000
sterility1.000000
zhejiang province1.000000
cloaca1.000000
nipponia nippon1.000000
deqing county1.000000
human adult stage1.000000
artificial incubator1.000000
feces1.000000
newborn human stage1.000000
LOWER IN feces1.000000
female organism1.000000
5-year-old human stage1.000000
male organism1.000000
young adult stage1.000000
1-year-old human stage1.000000
3-year-old human stage1.000000
2-year-old human stage1.000000
brooding room1.000000
child stage1.000000
outdoor artificial cage1.000000
infant stage1.000000
LOWER IN human adult stage1.000000
LOWER IN captive1.000000
LOWER IN cloaca1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1485naNestling Samples at 36 Days Old (dominant china, brooding room, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 12pendingNo
1485naNestling Samples at 18 Days Old (dominant china, brooding room, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 13pendingNo
1485naNestling Samples at 27 Days Old (dominant china, brooding room, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 13pendingNo
1485naNestling Samples at 45 Days Old (dominant china, outdoor artificial cage, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 14pendingNo
1485naNestling Samples at 1 Day Old (dominant china, artificial incubator, zhejiang province, nipponia nippon, deqing county, feces, newborn human stage)2025-10-30v41 / 15pendingNo
1485naAdult Samples at 2 Years Old (dominant china, captive, female organism, 2-year-old human stage, young adult stage, zhejiang province, cloaca, nipponia nippon, deqing county, male organism)2025-10-30v41 / 15pendingNo
1485naAdult Samples at 3 Years Old (dominant china, captive, female organism, 3-year-old human stage, young adult stage, zhejiang province, cloaca, nipponia nippon, deqing county, male organism)2025-10-30v41 / 15pendingNo
1485naAdult Samples at 1 Year Old (dominant china, captive, female organism, young adult stage, zhejiang province, cloaca, nipponia nippon, deqing county, 1-year-old human stage, male organism)2025-10-30v41 / 17pendingNo
1485naNestling Samples at 9 Days Old (dominant china, brooding room, infant stage, zhejiang province, nipponia nippon, deqing county, feces)2025-10-30v41 / 18pendingNo
1485naNestling Samples at 1 Day Old (dominant china, zhejiang province, nipponia nippon, deqing county, feces)2025-10-30v41 / 19pendingNo
1485naNormal Adult Samples (dominant china, captive, zhejiang province, cloaca, nipponia nippon, deqing county, human adult stage)2025-10-30v41 / 20pendingNo
1485naAdult Samples at 5 Years Old (dominant china, captive, female organism, 5-year-old human stage, zhejiang province, cloaca, nipponia nippon, deqing county, human adult stage, male organism)2025-10-30v41 / 22pendingNo
1485naSterile Adult Samples (dominant china, captive, sterility, zhejiang province, cloaca, nipponia nippon, deqing county, human adult stage)2025-10-30v41 / 26pendingNo
1485naNestling Samples at 1 Day Old (common china, zhejiang province, nipponia nippon, deqing county, feces)2025-10-30v41 / 59pendingNo
1485naNestling vs Adult microbiome ( high in feces compared to human adult stage captive cloaca in nipponia nippon china deqing county zhejiang province )2025-10-30v41 / 66pendingNo
1485naNestling Samples at 9 Days Old (common china, brooding room, infant stage, zhejiang province, nipponia nippon, deqing county, feces)2025-10-30v41 / 69pendingNo
1485naNestling Samples at 45 Days Old (common china, outdoor artificial cage, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 75pendingNo
1485naNestling Samples at 18 Days Old (common china, brooding room, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 82pendingNo
1485naNestling Samples at 27 Days Old (common china, brooding room, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 82pendingNo
1485naNestling Samples at 36 Days Old (common china, brooding room, zhejiang province, nipponia nippon, child stage, deqing county, feces)2025-10-30v41 / 85pendingNo
1485naAdult Samples at 2 Years Old (common china, captive, female organism, 2-year-old human stage, young adult stage, zhejiang province, cloaca, nipponia nippon, deqing county, male organism)2025-10-30v41 / 115pendingNo
1485naNormal Adult Samples (common china, captive, zhejiang province, cloaca, nipponia nippon, deqing county, human adult stage)2025-10-30v41 / 116pendingNo
1485naAdult Samples at 3 Years Old (common china, captive, female organism, 3-year-old human stage, young adult stage, zhejiang province, cloaca, nipponia nippon, deqing county, male organism)2025-10-30v41 / 117pendingNo
1485naAdult Samples at 1 Year Old (common china, captive, female organism, young adult stage, zhejiang province, cloaca, nipponia nippon, deqing county, 1-year-old human stage, male organism)2025-10-30v41 / 136pendingNo
1485naAdult Samples at 5 Years Old (common china, captive, female organism, 5-year-old human stage, zhejiang province, cloaca, nipponia nippon, deqing county, human adult stage, male organism)2025-10-30v41 / 159pendingNo
1485naNestling vs Adult microbiome ( high in human adult stage captive cloaca compared to feces in nipponia nippon china deqing county zhejiang province )2025-10-30v41 / 189pendingNo
1485naNestling Samples at 1 Day Old (common china, artificial incubator, zhejiang province, nipponia nippon, deqing county, feces, newborn human stage)2025-10-30v41 / 208pendingNo
1485naSterile Adult Samples (common china, captive, sterility, zhejiang province, cloaca, nipponia nippon, deqing county, human adult stage)2025-10-30v41 / 248pendingNo

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