Experiment ID: 1472

Field Description
nametumor microbiome diversity and composition influence pancreatic cancer outcomes (7288240) - gpt-4o-mini-2024-07-18
proj_id7288240
sraprjna542615
date_of_upload30/10/2025 13:58
doi10.1016/j.cell.2019.07.008
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
houston0.666667
united states of america0.006645
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
houston0.500000
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
city of houston1.000000
homo sapiens1.000000
united states of america1.000000
no antibiotic use1.000000
pancreatic ductal adenocarcinoma1.000000
host tissue1.000000
pancreatic system1.000000
houston1.000000
long-term survivors0.500000
lts0.500000
sts0.500000
short-term survivors0.500000
LOWER IN sts0.166667
LOWER IN short-term survivors0.166667
LOWER IN long-term survivors0.166667
LOWER IN lts0.166667
Number of experiments associating the term to the sequence
TermScore
long-term survivors1.000000
lts1.000000
LOWER IN sts1.000000
LOWER IN short-term survivors1.000000
city of houston1.000000
homo sapiens1.000000
united states of america1.000000
no antibiotic use1.000000
pancreatic ductal adenocarcinoma1.000000
host tissue1.000000
pancreatic system1.000000
houston1.000000
sts1.000000
short-term survivors1.000000
LOWER IN long-term survivors1.000000
LOWER IN lts1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1472naShort-Term Survivors (STS) Samples (common city of houston, homo sapiens, united states of america, no antibiotic use, sts, pancreatic ductal adenocarcinoma, host tissue, short-term survivors, pancreatic system, houston)2025-10-30v41 / 9pendingNo
1472naLong-Term Survivors (LTS) Samples (dominant city of houston, homo sapiens, united states of america, no antibiotic use, long-term survivors, lts, pancreatic ductal adenocarcinoma, host tissue, pancreatic system, houston)2025-10-30v41 / 10pendingNo
1472naLong-Term Survivors (LTS) Samples (common city of houston, homo sapiens, united states of america, no antibiotic use, long-term survivors, lts, pancreatic ductal adenocarcinoma, host tissue, pancreatic system, houston)2025-10-30v41 / 16pendingNo
1472naLong-Term Survivors vs Short-Term Survivors in pancreatic tissue ( high in sts short-term survivors compared to long-term survivors lts in city of houston homo sapiens united states of america no antibiotic use pancreatic ductal adenocarcinoma host tissue pancreatic system houston )2025-10-30v41 / 16pendingNo
1472naShort-Term Survivors (STS) Samples (dominant city of houston, homo sapiens, united states of america, no antibiotic use, sts, pancreatic ductal adenocarcinoma, host tissue, short-term survivors, pancreatic system, houston)2025-10-30v41 / 18pendingNo
1472naLong-Term Survivors vs Short-Term Survivors in pancreatic tissue ( high in long-term survivors lts compared to sts short-term survivors in city of houston homo sapiens united states of america no antibiotic use pancreatic ductal adenocarcinoma host tissue pancreatic system houston )2025-10-30v41 / 39pendingNo

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