Experiment ID: 1457

Field Description
namemicrobial composition predicts genital tract inflammation and persistent bacterial vaginosis in south african adolescent females (5736802) - gpt-4o-mini-2024-07-18
proj_id5736802
sraprjeb15497
date_of_upload30/10/2025 13:54
doi10.1128/iai.00410-17
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
20-year-old human stage0.666667
south africa0.166667
adolescent stage0.142857
vagina0.117647
female organism0.100000
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
20-year-old human stage0.500000
south africa0.090909
adolescent stage0.076923
vagina0.062500
female organism0.052632
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
21-year-old human stage1.000000
adolescent stage1.000000
16-year-old human stage1.000000
17-year-old human stage1.000000
18-year-old human stage1.000000
female organism1.000000
cape town1.000000
22-year-old human stage1.000000
south africa1.000000
hiv-negative1.000000
vaginal fluid1.000000
republic of south africa1.000000
20-year-old human stage1.000000
vagina1.000000
19-year-old human stage1.000000
hormonal contraception use1.000000
low inflammation0.500000
high inflammation0.500000
LOWER IN high inflammation0.166667
LOWER IN low inflammation0.166667
Exp. ID User ID Description Date Region Sequences Status Flag
1457naLow Inflammation Microbiota Samples (dominant homo sapiens, low inflammation, 21-year-old human stage, adolescent stage, 16-year-old human stage, 17-year-old human stage, 18-year-old human stage, female organism, cape town, 22-year-old human stage, south africa, hiv-negative, vaginal fluid, republic of south africa, 20-year-old human stage, vagina, 19-year-old human stage, hormonal contraception use)2025-10-30v41 / 13pendingNo
1457naHigh Inflammation Microbiota Samples (dominant homo sapiens, 21-year-old human stage, adolescent stage, 16-year-old human stage, 17-year-old human stage, 18-year-old human stage, high inflammation, female organism, cape town, 22-year-old human stage, south africa, hiv-negative, vaginal fluid, republic of south africa, 20-year-old human stage, vagina, 19-year-old human stage, hormonal contraception use)2025-10-30v41 / 17pendingNo
1457naLow Inflammation Microbiota Samples (common homo sapiens, low inflammation, 21-year-old human stage, adolescent stage, 16-year-old human stage, 17-year-old human stage, 18-year-old human stage, female organism, cape town, 22-year-old human stage, south africa, hiv-negative, vaginal fluid, republic of south africa, 20-year-old human stage, vagina, 19-year-old human stage, hormonal contraception use)2025-10-30v41 / 51pendingNo
1457naHigh Inflammation Microbiota Samples (common homo sapiens, 21-year-old human stage, adolescent stage, 16-year-old human stage, 17-year-old human stage, 18-year-old human stage, high inflammation, female organism, cape town, 22-year-old human stage, south africa, hiv-negative, vaginal fluid, republic of south africa, 20-year-old human stage, vagina, 19-year-old human stage, hormonal contraception use)2025-10-30v41 / 56pendingNo
1457naHigh vs Low Inflammation Microbiota in Vaginal Samples ( high in high inflammation compared to low inflammation in homo sapiens 21-year-old human stage adolescent stage 16-year-old human stage 17-year-old human stage 18-year-old human stage female organism cape town 22-year-old human stage south africa hiv-negative vaginal fluid republic of south africa 20-year-old human stage vagina 19-year-old human stage hormonal contraception use )2025-10-30v41 / 57pendingNo
1457naHigh vs Low Inflammation Microbiota in Vaginal Samples ( high in low inflammation compared to high inflammation in homo sapiens 21-year-old human stage adolescent stage 16-year-old human stage 17-year-old human stage 18-year-old human stage female organism cape town 22-year-old human stage south africa hiv-negative vaginal fluid republic of south africa 20-year-old human stage vagina 19-year-old human stage hormonal contraception use )2025-10-30v41 / 222pendingNo

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