Experiment ID: 1444

Field Description
namedynamics of the fecal microbiome in patients with recurrent and nonrecurrent clostridium difficile infection (4847246) - gpt-4o-mini-2024-07-18
proj_id4847246
sraprjna307992
date_of_upload30/10/2025 13:51
doi10.1186/s13073-016-0298-8
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

Fraction of annotations for the query sequences containing the term
TermScore
hospital1.000000
homo sapiens1.000000
human adult stage1.000000
feces1.000000
ann arbor1.000000
united states range1.000000
clostridium difficile colitis1.000000
no antibiotic use1.000000
index0.357143
recurrent0.357143
negative control0.285714
control0.285714
no immunization: vehicle as control0.285714
control diet0.285714
no stress: single housed control0.285714
nonrecurrent0.214286
reinfection0.142857
LOWER IN negative control0.142857
LOWER IN control0.142857
LOWER IN no immunization: vehicle as control0.142857
LOWER IN control diet0.142857
LOWER IN no stress: single housed control0.142857
LOWER IN nonrecurrent0.071429
LOWER IN index0.071429
LOWER IN recurrent0.071429
Exp. ID User ID Description Date Region Sequences Status Flag
1444naNonrecurrent vs Recurrent CDI Samples ( high in negative control control no immunization: vehicle as control control diet no stress: single housed control compared to recurrent in hospital homo sapiens human adult stage feces ann arbor united states range clostridium difficile colitis no antibiotic use )2025-10-30v41 / 2pendingNo
1444naNonrecurrent vs Recurrent CDI Samples ( high in recurrent compared to negative control control no immunization: vehicle as control control diet no stress: single housed control in hospital homo sapiens human adult stage feces ann arbor united states range clostridium difficile colitis no antibiotic use )2025-10-30v41 / 3pendingNo
1444naReinfection CDI Samples (common hospital, homo sapiens, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, no antibiotic use, reinfection)2025-10-30v41 / 5pendingNo
1444naNonrecurrent CDI Samples (common negative control, hospital, homo sapiens, control, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, no immunization: vehicle as control, control diet, no antibiotic use, no stress: single housed control)2025-10-30v41 / 10pendingNo
1444naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in nonrecurrent index compared to negative control control no immunization: vehicle as control control diet no stress: single housed control in hospital homo sapiens human adult stage feces ann arbor united states range clostridium difficile colitis no antibiotic use )2025-10-30v41 / 10pendingNo
1444naRecurrent CDI Samples (common hospital, homo sapiens, recurrent, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, no antibiotic use)2025-10-30v41 / 11pendingNo
1444naIndex Samples from Recurrent Patients (common hospital, homo sapiens, recurrent, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, index, no antibiotic use)2025-10-30v41 / 14pendingNo
1444naIndex Samples from Nonrecurrent Patients (common hospital, homo sapiens, human adult stage, feces, ann arbor, nonrecurrent, united states range, clostridium difficile colitis, index, no antibiotic use)2025-10-30v41 / 15pendingNo
1444naReinfection CDI Samples (dominant hospital, homo sapiens, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, no antibiotic use, reinfection)2025-10-30v41 / 17pendingNo
1444naNonrecurrent CDI Samples (dominant negative control, hospital, homo sapiens, control, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, no immunization: vehicle as control, control diet, no antibiotic use, no stress: single housed control)2025-10-30v41 / 18pendingNo
1444naRecurrent CDI Samples (dominant hospital, homo sapiens, recurrent, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, no antibiotic use)2025-10-30v41 / 20pendingNo
1444naIndex Samples from Recurrent Patients (dominant hospital, homo sapiens, recurrent, human adult stage, feces, ann arbor, united states range, clostridium difficile colitis, index, no antibiotic use)2025-10-30v41 / 23pendingNo
1444naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in negative control control no immunization: vehicle as control control diet no stress: single housed control compared to nonrecurrent index in hospital homo sapiens human adult stage feces ann arbor united states range clostridium difficile colitis no antibiotic use )2025-10-30v41 / 23pendingNo
1444naIndex Samples from Nonrecurrent Patients (dominant hospital, homo sapiens, human adult stage, feces, ann arbor, nonrecurrent, united states range, clostridium difficile colitis, index, no antibiotic use)2025-10-30v41 / 27pendingNo

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