Experiment ID: 1416

Field Description
namecharacterization of rumen microbiota of two sheep breeds supplemented with direct-fed lactic acid bacteria (7843511) - gpt-4o-mini-2024-07-18
proj_id7843511
sraprjna578022
date_of_upload28/10/2025 12:28
doi10.3389/fvets.2020.570074
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
south africa0.166667
antimicrobial agent0.153846
LOWER IN male organism0.117647
ovis aries0.111111
LOWER IN female organism0.100000
male organism0.096774
female organism0.088235
rumen0.071429
control0.008475
Fraction of dbbact annotations with this term covered by the query
TermScore
antimicrobial agent0.500000
LOWER IN male organism0.166667
LOWER IN female organism0.111111
south africa0.090909
male organism0.058824
ovis aries0.058824
female organism0.052632
rumen0.037037
control0.004444
Fraction of annotations for the query sequences containing the term
TermScore
rumen1.000000
city of irene1.000000
south africa1.000000
republic of south africa1.000000
ovis aries1.000000
rumen epithelium1.000000
rumen contents1.000000
male organism0.272727
female organism0.272727
lactobacillus rhamnosus0.272727
lactobacillus rhamnosus gg0.181818
antibiotic use0.090909
antimicrobial agent0.090909
control0.090909
LOWER IN female organism0.090909
LOWER IN male organism0.090909
Number of experiments associating the term to the sequence
TermScore
male organism1.000000
rumen1.000000
city of irene1.000000
south africa1.000000
republic of south africa1.000000
ovis aries1.000000
rumen epithelium1.000000
rumen contents1.000000
female organism1.000000
lactobacillus rhamnosus1.000000
antibiotic use1.000000
antimicrobial agent1.000000
lactobacillus rhamnosus gg1.000000
control1.000000
LOWER IN female organism1.000000
LOWER IN male organism1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1416naDamara Female Rumen Samples (dominant rumen, female organism, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 3pendingNo
1416naAntibiotic Treated Rumen Samples (dominant rumen, city of irene, antibiotic use, south africa, republic of south africa, antimicrobial agent, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 3pendingNo
1416naRumen microbiota in male vs female Damara sheep ( high in female organism compared to male organism in rumen city of irene south africa republic of south africa ovis aries rumen epithelium rumen contents )2025-10-28v31 / 4pendingNo
1416naMeatmaster Female Rumen Samples (dominant rumen, female organism, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 5pendingNo
1416naCombination Probiotic Rumen Samples (dominant lactobacillus rhamnosus, rumen, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 5pendingNo
1416naSingle Probiotic SCH Rumen Samples (dominant lactobacillus rhamnosus, rumen, city of irene, south africa, republic of south africa, ovis aries, lactobacillus rhamnosus gg, rumen epithelium, rumen contents)2025-10-28v31 / 5pendingNo
1416naSingle Probiotic AF3G Rumen Samples (dominant lactobacillus rhamnosus, rumen, city of irene, south africa, republic of south africa, ovis aries, lactobacillus rhamnosus gg, rumen epithelium, rumen contents)2025-10-28v31 / 6pendingNo
1416naNegative Control Rumen Samples (dominant rumen, control, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 6pendingNo
1416naMeatmaster Male Rumen Samples (dominant male organism, rumen, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 7pendingNo
1416naDamara Male Rumen Samples (dominant male organism, rumen, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 8pendingNo
1416naRumen microbiota in male vs female Damara sheep ( high in male organism compared to female organism in rumen city of irene south africa republic of south africa ovis aries rumen epithelium rumen contents )2025-10-28v31 / 20pendingNo
1416naRumen microbiota in male vs female Meatmaster sheep ( high in female organism compared to male organism in rumen city of irene south africa republic of south africa ovis aries rumen epithelium rumen contents )2025-10-28v31 / 215pendingNo
1416naRumen microbiota in male vs female Meatmaster sheep ( high in male organism compared to female organism in rumen city of irene south africa republic of south africa ovis aries rumen epithelium rumen contents )2025-10-28v31 / 218pendingNo
1416naNegative Control Rumen Samples (common rumen, control, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 415pendingNo
1416naSingle Probiotic AF3G Rumen Samples (common lactobacillus rhamnosus, rumen, city of irene, south africa, republic of south africa, ovis aries, lactobacillus rhamnosus gg, rumen epithelium, rumen contents)2025-10-28v31 / 472pendingNo
1416naMeatmaster Male Rumen Samples (common male organism, rumen, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 537pendingNo
1416naMeatmaster Female Rumen Samples (common rumen, female organism, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 551pendingNo
1416naSingle Probiotic SCH Rumen Samples (common lactobacillus rhamnosus, rumen, city of irene, south africa, republic of south africa, ovis aries, lactobacillus rhamnosus gg, rumen epithelium, rumen contents)2025-10-28v31 / 553pendingNo
1416naAntibiotic Treated Rumen Samples (common rumen, city of irene, antibiotic use, south africa, republic of south africa, antimicrobial agent, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 620pendingNo
1416naCombination Probiotic Rumen Samples (common lactobacillus rhamnosus, rumen, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 644pendingNo
1416naDamara Female Rumen Samples (common rumen, female organism, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 657pendingNo
1416naDamara Male Rumen Samples (common male organism, rumen, city of irene, south africa, republic of south africa, ovis aries, rumen epithelium, rumen contents)2025-10-28v31 / 675pendingNo

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