Experiment ID: 1404

Field Description
nametumor microbiome diversity and composition influence pancreatic cancer outcomes (7288240) - gpt-4o-mini-2024-07-18
proj_id7288240
sraprjna542615
date_of_upload28/10/2025 12:27
doi10.1016/j.cell.2019.07.008
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

term enrichment score
TermScore
houston0.666667
united states of america0.006645
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
houston0.500000
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
no antibiotic use1.000000
pancreatic system1.000000
houston1.000000
city of houston1.000000
homo sapiens1.000000
host tissue1.000000
pancreatic ductal adenocarcinoma1.000000
united states of america1.000000
lts0.500000
long-term survivors0.500000
short-term survivors0.500000
sts0.500000
LOWER IN sts0.166667
LOWER IN short-term survivors0.166667
LOWER IN lts0.166667
LOWER IN long-term survivors0.166667
Number of experiments associating the term to the sequence
TermScore
lts1.000000
long-term survivors1.000000
LOWER IN sts1.000000
LOWER IN short-term survivors1.000000
no antibiotic use1.000000
pancreatic system1.000000
houston1.000000
city of houston1.000000
homo sapiens1.000000
host tissue1.000000
pancreatic ductal adenocarcinoma1.000000
united states of america1.000000
short-term survivors1.000000
sts1.000000
LOWER IN lts1.000000
LOWER IN long-term survivors1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1404naShort-Term Survivors (STS) Samples (common no antibiotic use, short-term survivors, pancreatic system, houston, city of houston, sts, homo sapiens, host tissue, pancreatic ductal adenocarcinoma, united states of america)2025-10-28v41 / 9pendingNo
1404naLong-Term Survivors (LTS) Samples (dominant no antibiotic use, pancreatic system, houston, lts, city of houston, long-term survivors, homo sapiens, host tissue, pancreatic ductal adenocarcinoma, united states of america)2025-10-28v41 / 10pendingNo
1404naLong-Term Survivors (LTS) Samples (common no antibiotic use, pancreatic system, houston, lts, city of houston, long-term survivors, homo sapiens, host tissue, pancreatic ductal adenocarcinoma, united states of america)2025-10-28v41 / 16pendingNo
1404naShort-Term Survivors (STS) Samples (dominant no antibiotic use, short-term survivors, pancreatic system, houston, city of houston, sts, homo sapiens, host tissue, pancreatic ductal adenocarcinoma, united states of america)2025-10-28v41 / 18pendingNo
1404naLong-Term Survivors vs Short-Term Survivors in pancreatic tissue ( high in sts short-term survivors compared to lts long-term survivors in no antibiotic use pancreatic system houston city of houston homo sapiens host tissue pancreatic ductal adenocarcinoma united states of america )2025-10-28v41 / 18pendingNo
1404naLong-Term Survivors vs Short-Term Survivors in pancreatic tissue ( high in lts long-term survivors compared to sts short-term survivors in no antibiotic use pancreatic system houston city of houston homo sapiens host tissue pancreatic ductal adenocarcinoma united states of america )2025-10-28v41 / 50pendingNo

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