Experiment ID: 1353

Field Description
namedynamics of the fecal microbiome in patients with recurrent and nonrecurrent clostridium difficile infection (4847246) - gpt-4o-mini-2024-07-18
proj_id4847246
sraprjna307992
date_of_upload28/10/2025 11:45
doi10.1186/s13073-016-0298-8
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
ann arbor1.000000
feces1.000000
human adult stage1.000000
clostridium difficile colitis1.000000
no antibiotic use1.000000
united states range1.000000
hospital1.000000
index0.357143
recurrent0.357143
control0.285714
negative control0.285714
no stress: single housed control0.285714
control diet0.285714
no immunization: vehicle as control0.285714
nonrecurrent0.214286
reinfection0.142857
LOWER IN control0.142857
LOWER IN negative control0.142857
LOWER IN no stress: single housed control0.142857
LOWER IN control diet0.142857
LOWER IN no immunization: vehicle as control0.142857
LOWER IN index0.071429
LOWER IN nonrecurrent0.071429
LOWER IN recurrent0.071429
Exp. ID User ID Description Date Region Sequences Status Flag
1353naNonrecurrent vs Recurrent CDI Samples ( high in control negative control no stress: single housed control control diet no immunization: vehicle as control compared to recurrent in homo sapiens ann arbor feces human adult stage clostridium difficile colitis no antibiotic use united states range hospital )2025-10-28v41 / 2pendingNo
1353naNonrecurrent vs Recurrent CDI Samples ( high in recurrent compared to control negative control no stress: single housed control control diet no immunization: vehicle as control in homo sapiens ann arbor feces human adult stage clostridium difficile colitis no antibiotic use united states range hospital )2025-10-28v41 / 2pendingNo
1353naReinfection CDI Samples (common homo sapiens, ann arbor, feces, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, hospital, reinfection)2025-10-28v41 / 5pendingNo
1353naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in index nonrecurrent compared to control negative control no stress: single housed control control diet no immunization: vehicle as control in homo sapiens ann arbor feces human adult stage clostridium difficile colitis no antibiotic use united states range hospital )2025-10-28v41 / 8pendingNo
1353naNonrecurrent CDI Samples (common homo sapiens, ann arbor, feces, control, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, negative control, hospital, no stress: single housed control, control diet, no immunization: vehicle as control)2025-10-28v41 / 10pendingNo
1353naRecurrent CDI Samples (common homo sapiens, ann arbor, feces, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, recurrent, hospital)2025-10-28v41 / 11pendingNo
1353naIndex Samples from Recurrent Patients (common homo sapiens, ann arbor, feces, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, recurrent, hospital, index)2025-10-28v41 / 14pendingNo
1353naIndex Samples from Nonrecurrent Patients (common homo sapiens, ann arbor, feces, nonrecurrent, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, hospital, index)2025-10-28v41 / 15pendingNo
1353naReinfection CDI Samples (dominant homo sapiens, ann arbor, feces, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, hospital, reinfection)2025-10-28v41 / 17pendingNo
1353naNonrecurrent CDI Samples (dominant homo sapiens, ann arbor, feces, control, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, negative control, hospital, no stress: single housed control, control diet, no immunization: vehicle as control)2025-10-28v41 / 18pendingNo
1353naRecurrent CDI Samples (dominant homo sapiens, ann arbor, feces, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, recurrent, hospital)2025-10-28v41 / 20pendingNo
1353naIndex Samples from Recurrent Patients (dominant homo sapiens, ann arbor, feces, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, recurrent, hospital, index)2025-10-28v41 / 23pendingNo
1353naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in control negative control no stress: single housed control control diet no immunization: vehicle as control compared to index nonrecurrent in homo sapiens ann arbor feces human adult stage clostridium difficile colitis no antibiotic use united states range hospital )2025-10-28v41 / 26pendingNo
1353naIndex Samples from Nonrecurrent Patients (dominant homo sapiens, ann arbor, feces, nonrecurrent, human adult stage, clostridium difficile colitis, no antibiotic use, united states range, hospital, index)2025-10-28v41 / 27pendingNo

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