Experiment ID: 1335

Field Description
namedynamics of the fecal microbiome in patients with recurrent and nonrecurrent clostridium difficile infection (4847246) - gpt-4o-mini-2024-07-18
proj_id4847246
sraprjna307992
date_of_upload27/10/2025 18:05
doi10.1186/s13073-016-0298-8
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

Fraction of annotations for the query sequences containing the term
TermScore
united states range1.000000
feces1.000000
ann arbor1.000000
no antibiotic use1.000000
hospital1.000000
homo sapiens1.000000
clostridium difficile colitis1.000000
human adult stage1.000000
index0.416667
recurrent0.333333
nonrecurrent0.250000
no stress: single housed control0.250000
negative control0.250000
control0.250000
control diet0.250000
no immunization: vehicle as control0.250000
reinfection0.166667
LOWER IN nonrecurrent0.083333
LOWER IN index0.083333
LOWER IN no stress: single housed control0.083333
LOWER IN negative control0.083333
LOWER IN control diet0.083333
LOWER IN no immunization: vehicle as control0.083333
LOWER IN control0.083333
Exp. ID User ID Description Date Region Sequences Status Flag
1335naReinfection CDI Samples (common united states range, feces, ann arbor, no antibiotic use, hospital, reinfection, homo sapiens, clostridium difficile colitis, human adult stage)2025-10-27v41 / 5pendingNo
1335naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in nonrecurrent index compared to no stress: single housed control negative control control diet no immunization: vehicle as control control in united states range feces ann arbor no antibiotic use hospital homo sapiens clostridium difficile colitis human adult stage )2025-10-27v41 / 6pendingNo
1335naNonrecurrent CDI Samples (common no stress: single housed control, united states range, negative control, feces, ann arbor, control, no antibiotic use, hospital, control diet, homo sapiens, no immunization: vehicle as control, clostridium difficile colitis, human adult stage)2025-10-27v41 / 10pendingNo
1335naRecurrent CDI Samples (common united states range, feces, ann arbor, recurrent, no antibiotic use, hospital, homo sapiens, clostridium difficile colitis, human adult stage)2025-10-27v41 / 11pendingNo
1335naIndex Samples from Recurrent Patients (common united states range, feces, ann arbor, index, recurrent, no antibiotic use, hospital, homo sapiens, clostridium difficile colitis, human adult stage)2025-10-27v41 / 14pendingNo
1335naIndex Samples from Nonrecurrent Patients (common united states range, feces, ann arbor, index, no antibiotic use, hospital, homo sapiens, nonrecurrent, clostridium difficile colitis, human adult stage)2025-10-27v41 / 15pendingNo
1335naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in no stress: single housed control negative control control diet no immunization: vehicle as control control compared to nonrecurrent index in united states range feces ann arbor no antibiotic use hospital homo sapiens clostridium difficile colitis human adult stage )2025-10-27v41 / 16pendingNo
1335naReinfection CDI Samples (dominant united states range, feces, ann arbor, no antibiotic use, hospital, reinfection, homo sapiens, clostridium difficile colitis, human adult stage)2025-10-27v41 / 17pendingNo
1335naNonrecurrent CDI Samples (dominant no stress: single housed control, united states range, negative control, feces, ann arbor, control, no antibiotic use, hospital, control diet, homo sapiens, no immunization: vehicle as control, clostridium difficile colitis, human adult stage)2025-10-27v41 / 18pendingNo
1335naRecurrent CDI Samples (dominant united states range, feces, ann arbor, recurrent, no antibiotic use, hospital, homo sapiens, clostridium difficile colitis, human adult stage)2025-10-27v41 / 20pendingNo
1335naIndex Samples from Recurrent Patients (dominant united states range, feces, ann arbor, index, recurrent, no antibiotic use, hospital, homo sapiens, clostridium difficile colitis, human adult stage)2025-10-27v41 / 23pendingNo
1335naIndex Samples from Nonrecurrent Patients (dominant united states range, feces, ann arbor, index, no antibiotic use, hospital, homo sapiens, nonrecurrent, clostridium difficile colitis, human adult stage)2025-10-27v41 / 27pendingNo

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