Experiment ID: 1316

Field Description
namedynamics of the fecal microbiome in patients with recurrent and nonrecurrent clostridium difficile infection (4847246) - gpt-4o-mini-2024-07-18
proj_id4847246
sraprjna307992
date_of_upload27/10/2025 16:34
doi10.1186/s13073-016-0298-8
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

Fraction of annotations for the query sequences containing the term
TermScore
no antibiotic use1.000000
united states range1.000000
ann arbor1.000000
homo sapiens1.000000
hospital1.000000
human adult stage1.000000
feces1.000000
clostridium difficile colitis1.000000
index0.357143
recurrent0.357143
no stress: single housed control0.285714
negative control0.285714
control0.285714
no immunization: vehicle as control0.285714
control diet0.285714
nonrecurrent0.214286
reinfection0.142857
LOWER IN no stress: single housed control0.142857
LOWER IN negative control0.142857
LOWER IN control0.142857
LOWER IN no immunization: vehicle as control0.142857
LOWER IN control diet0.142857
LOWER IN index0.071429
LOWER IN nonrecurrent0.071429
LOWER IN recurrent0.071429
Exp. ID User ID Description Date Region Sequences Status Flag
1316naNonrecurrent vs Recurrent CDI Samples ( high in no stress: single housed control negative control control no immunization: vehicle as control control diet compared to recurrent in no antibiotic use united states range ann arbor homo sapiens hospital human adult stage feces clostridium difficile colitis )2025-10-27v41 / 1pendingNo
1316naNonrecurrent vs Recurrent CDI Samples ( high in recurrent compared to no stress: single housed control negative control control no immunization: vehicle as control control diet in no antibiotic use united states range ann arbor homo sapiens hospital human adult stage feces clostridium difficile colitis )2025-10-27v41 / 2pendingNo
1316naReinfection CDI Samples (common no antibiotic use, united states range, reinfection, ann arbor, homo sapiens, hospital, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 5pendingNo
1316naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in index nonrecurrent compared to no stress: single housed control negative control control no immunization: vehicle as control control diet in no antibiotic use united states range ann arbor homo sapiens hospital human adult stage feces clostridium difficile colitis )2025-10-27v41 / 7pendingNo
1316naNonrecurrent CDI Samples (common no antibiotic use, united states range, ann arbor, homo sapiens, no stress: single housed control, negative control, control diet, hospital, control, no immunization: vehicle as control, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 10pendingNo
1316naRecurrent CDI Samples (common no antibiotic use, united states range, ann arbor, homo sapiens, hospital, recurrent, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 11pendingNo
1316naIndex Samples from Recurrent Patients (common no antibiotic use, united states range, index, ann arbor, homo sapiens, hospital, recurrent, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 14pendingNo
1316naIndex Samples from Nonrecurrent Patients (common no antibiotic use, united states range, index, ann arbor, homo sapiens, nonrecurrent, hospital, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 15pendingNo
1316naReinfection CDI Samples (dominant no antibiotic use, united states range, reinfection, ann arbor, homo sapiens, hospital, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 17pendingNo
1316naNonrecurrent CDI Samples (dominant no antibiotic use, united states range, ann arbor, homo sapiens, no stress: single housed control, negative control, control diet, hospital, control, no immunization: vehicle as control, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 18pendingNo
1316naIndex Samples from Nonrecurrent Patients vs Nonrecurrent CDI Samples ( high in no stress: single housed control negative control control no immunization: vehicle as control control diet compared to index nonrecurrent in no antibiotic use united states range ann arbor homo sapiens hospital human adult stage feces clostridium difficile colitis )2025-10-27v41 / 19pendingNo
1316naRecurrent CDI Samples (dominant no antibiotic use, united states range, ann arbor, homo sapiens, hospital, recurrent, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 20pendingNo
1316naIndex Samples from Recurrent Patients (dominant no antibiotic use, united states range, index, ann arbor, homo sapiens, hospital, recurrent, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 23pendingNo
1316naIndex Samples from Nonrecurrent Patients (dominant no antibiotic use, united states range, index, ann arbor, homo sapiens, nonrecurrent, hospital, human adult stage, feces, clostridium difficile colitis)2025-10-27v41 / 27pendingNo

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