Experiment ID: 1309

Field Description
namegut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease (11650326) - gpt-5
proj_id11650326
sraprjna917086
date_of_upload26/10/2025 13:43
doi10.1016/j.isci.2024.111442
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
active disease0.478261
left colon0.250000
irritable bowel syndrome0.200000
inflammatory bowel disease0.193548
adolescent stage0.142857
south korea0.100000
LOWER IN inflammatory bowel disease0.095238
ileum0.093458
colon0.082192
ulcerative colitis0.081967
crohn's disease0.078740
LOWER IN active disease0.076923
LOWER IN colon0.066667
control0.008795
LOWER IN control0.008621
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN active disease0.500000
active disease0.500000
left colon0.250000
irritable bowel syndrome0.166667
LOWER IN inflammatory bowel disease0.111111
inflammatory bowel disease0.111111
adolescent stage0.076923
LOWER IN colon0.055556
south korea0.052632
ileum0.052632
ulcerative colitis0.045455
colon0.043478
crohn's disease0.043478
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
metropolitan city (republic of korea)1.000000
feces1.000000
homo sapiens1.000000
adolescent stage1.000000
south korea1.000000
human gut1.000000
colon0.750000
inflammatory bowel disease0.750000
active disease0.458333
control0.416667
ulcerative colitis0.416667
crohn's disease0.416667
ileum0.416667
irritable bowel syndrome0.250000
left colon0.250000
clinical remission0.208333
LOWER IN inflammatory bowel disease0.083333
LOWER IN colon0.083333
LOWER IN control0.083333
LOWER IN active disease0.041667
LOWER IN clinical remission0.041667
Number of experiments associating the term to the sequence
TermScore
control1.000000
LOWER IN inflammatory bowel disease1.000000
LOWER IN colon1.000000
LOWER IN active disease1.000000
metropolitan city (republic of korea)1.000000
feces1.000000
homo sapiens1.000000
adolescent stage1.000000
south korea1.000000
human gut1.000000
irritable bowel syndrome1.000000
left colon1.000000
colon1.000000
clinical remission1.000000
ulcerative colitis1.000000
inflammatory bowel disease1.000000
active disease1.000000
crohn's disease1.000000
ileum1.000000
LOWER IN control1.000000
LOWER IN clinical remission1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1309naRemission IBD (CD_remission + UC_remission) vs Controls (HC + FGD) ( high in inflammatory bowel disease colon clinical remission compared to control in metropolitan city (republic of korea) feces homo sapiens adolescent stage south korea human gut )2025-10-26v31 / 14pendingNo
1309naUlcerative colitis - Active (stool, pediatric, Korea) (dominant feces, metropolitan city (republic of korea), left colon, homo sapiens, colon, adolescent stage, ulcerative colitis, inflammatory bowel disease, active disease, south korea, human gut)2025-10-26v31 / 16pendingNo
1309naFunctional GI disorder controls (stool, pediatric, Korea) (dominant control, feces, metropolitan city (republic of korea), homo sapiens, adolescent stage, irritable bowel syndrome, south korea, human gut)2025-10-26v31 / 18pendingNo
1309naActive IBD (CD_active + UC_active) vs Controls (HC + FGD) (dominant control, feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, irritable bowel syndrome, ulcerative colitis, inflammatory bowel disease, crohn's disease, active disease, ileum, south korea, human gut)2025-10-26v31 / 19pendingNo
1309naRemission IBD (CD_remission + UC_remission) vs Controls (HC + FGD) ( high in control compared to inflammatory bowel disease colon clinical remission in metropolitan city (republic of korea) feces homo sapiens adolescent stage south korea human gut )2025-10-26v31 / 19pendingNo
1309naHealthy controls (stool, pediatric, Korea) (dominant control, metropolitan city (republic of korea), feces, homo sapiens, adolescent stage, south korea, human gut)2025-10-26v31 / 20pendingNo
1309naUC by activity (Active vs Remission) (dominant feces, metropolitan city (republic of korea), left colon, homo sapiens, colon, adolescent stage, ulcerative colitis, inflammatory bowel disease, active disease, south korea, human gut)2025-10-26v31 / 20pendingNo
1309naRemission IBD (CD_remission + UC_remission) vs Controls (HC + FGD) (dominant control, feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, irritable bowel syndrome, ulcerative colitis, inflammatory bowel disease, crohn's disease, ileum, south korea, human gut)2025-10-26v31 / 20pendingNo
1309naUlcerative colitis - Remission (stool, pediatric, Korea) (dominant feces, metropolitan city (republic of korea), left colon, homo sapiens, colon, adolescent stage, clinical remission, ulcerative colitis, inflammatory bowel disease, south korea, human gut)2025-10-26v31 / 21pendingNo
1309naCrohn's disease by activity (Active vs Remission) (dominant feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, inflammatory bowel disease, crohn's disease, active disease, ileum, south korea, human gut)2025-10-26v31 / 23pendingNo
1309naCrohn's disease - Remission (stool, pediatric, Korea) (dominant feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, clinical remission, inflammatory bowel disease, crohn's disease, ileum, south korea, human gut)2025-10-26v31 / 24pendingNo
1309naCrohn's disease - Active (stool, pediatric, Korea) (common feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, inflammatory bowel disease, crohn's disease, active disease, ileum, south korea, human gut)2025-10-26v31 / 28pendingNo
1309naCrohn's disease - Active (stool, pediatric, Korea) (dominant feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, inflammatory bowel disease, crohn's disease, active disease, ileum, south korea, human gut)2025-10-26v31 / 28pendingNo
1309naCrohn's disease by activity (Active vs Remission) (common feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, inflammatory bowel disease, crohn's disease, active disease, ileum, south korea, human gut)2025-10-26v31 / 30pendingNo
1309naCrohn's disease - Remission (stool, pediatric, Korea) (common feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, clinical remission, inflammatory bowel disease, crohn's disease, ileum, south korea, human gut)2025-10-26v31 / 32pendingNo
1309naUlcerative colitis - Active (stool, pediatric, Korea) (common feces, metropolitan city (republic of korea), left colon, homo sapiens, colon, adolescent stage, ulcerative colitis, inflammatory bowel disease, active disease, south korea, human gut)2025-10-26v31 / 33pendingNo
1309naActive IBD (CD_active + UC_active) vs Controls (HC + FGD) ( high in inflammatory bowel disease colon active disease compared to control in metropolitan city (republic of korea) feces homo sapiens adolescent stage south korea human gut )2025-10-26v31 / 34pendingNo
1309naActive IBD (CD_active + UC_active) vs Controls (HC + FGD) (common control, feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, irritable bowel syndrome, ulcerative colitis, inflammatory bowel disease, crohn's disease, active disease, ileum, south korea, human gut)2025-10-26v31 / 38pendingNo
1309naUC by activity (Active vs Remission) (common feces, metropolitan city (republic of korea), left colon, homo sapiens, colon, adolescent stage, ulcerative colitis, inflammatory bowel disease, active disease, south korea, human gut)2025-10-26v31 / 44pendingNo
1309naRemission IBD (CD_remission + UC_remission) vs Controls (HC + FGD) (common control, feces, metropolitan city (republic of korea), homo sapiens, colon, adolescent stage, irritable bowel syndrome, ulcerative colitis, inflammatory bowel disease, crohn's disease, ileum, south korea, human gut)2025-10-26v31 / 44pendingNo
1309naUlcerative colitis - Remission (stool, pediatric, Korea) (common feces, metropolitan city (republic of korea), left colon, homo sapiens, colon, adolescent stage, clinical remission, ulcerative colitis, inflammatory bowel disease, south korea, human gut)2025-10-26v31 / 47pendingNo
1309naFunctional GI disorder controls (stool, pediatric, Korea) (common control, feces, metropolitan city (republic of korea), homo sapiens, adolescent stage, irritable bowel syndrome, south korea, human gut)2025-10-26v31 / 51pendingNo
1309naHealthy controls (stool, pediatric, Korea) (common control, metropolitan city (republic of korea), feces, homo sapiens, adolescent stage, south korea, human gut)2025-10-26v31 / 61pendingNo
1309naActive IBD (CD_active + UC_active) vs Controls (HC + FGD) ( high in control compared to inflammatory bowel disease colon active disease in metropolitan city (republic of korea) feces homo sapiens adolescent stage south korea human gut )2025-10-26v31 / 63pendingNo

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