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Experiment ID: 13

Field	Description
name	spatial heterogeneity of gut microbial composition along the gastrointestinal tract in natural populations of house mice
sra	erp016947
sra	prjeb15238
datamd5	40c3c1bc42d28ba0baf43fa63e1828dd
mapmd5	3e764deaff3855d5bf42a0374f9c959e

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN esophagus	0.400000
esophagus	0.222222
gastrointestinal system	0.142857
LOWER IN mouth	0.133333
LOWER IN rectum	0.133333
LOWER IN stomach	0.095238
rectum	0.080000
LOWER IN duodenum	0.080000
LOWER IN ileum	0.064516
duodenum	0.064516
stomach	0.057143
LOWER IN colon	0.054054
ileum	0.051282
LOWER IN caecum	0.051282
colon	0.042553
mouth	0.039216
LOWER IN feces	0.032787
caecum	0.019802
mus musculus	0.013699
united states of america	0.003333
feces	0.002291

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN esophagus	0.333333
esophagus	0.142857
gastrointestinal system	0.076923
LOWER IN mouth	0.076923
LOWER IN rectum	0.076923
LOWER IN stomach	0.052632
rectum	0.043478
LOWER IN duodenum	0.043478
LOWER IN ileum	0.034483
duodenum	0.034483
stomach	0.030303
LOWER IN colon	0.028571
ileum	0.027027
LOWER IN caecum	0.027027
colon	0.022222
mouth	0.020408
LOWER IN feces	0.016949
caecum	0.010101
mus musculus	0.006897
united states of america	0.001669
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
mus musculus	1.000000
united states of america	1.000000
gastrointestinal system	1.000000
caecum	0.500000
colon	0.500000
rectum	0.500000
feces	0.500000
LOWER IN esophagus	0.500000
LOWER IN stomach	0.500000
LOWER IN duodenum	0.500000
LOWER IN ileum	0.500000
LOWER IN mouth	0.500000
esophagus	0.500000
stomach	0.500000
duodenum	0.500000
ileum	0.500000
LOWER IN caecum	0.500000
LOWER IN colon	0.500000
LOWER IN rectum	0.500000
LOWER IN feces	0.500000
mouth	0.500000

Number of experiments associating the term to the sequence

Term	Score
mus musculus	1.000000
united states of america	1.000000
gastrointestinal system	1.000000
caecum	1.000000
colon	1.000000
rectum	1.000000
feces	1.000000
LOWER IN esophagus	1.000000
LOWER IN stomach	1.000000
LOWER IN duodenum	1.000000
LOWER IN ileum	1.000000
LOWER IN mouth	1.000000
esophagus	1.000000
stomach	1.000000
duodenum	1.000000
ileum	1.000000
LOWER IN caecum	1.000000
LOWER IN colon	1.000000
LOWER IN rectum	1.000000
LOWER IN feces	1.000000
mouth	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
13	amnon	high in esophagus stomach duodenum ileum mouth compared to caecum colon rectum feces in mus musculus united states of america gastrointestinal system	2016-11-08	v4	1 / 25	approved	No
13	amnon	high in caecum colon rectum feces compared to esophagus stomach duodenum ileum mouth in mus musculus united states of america gastrointestinal system	2016-11-08	v4	1 / 316	approved	No

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