Experiment ID: 1298

Field Description
namevaginal and anal microbiome during chlamydia trachomatis infections (8539191) - gpt-5
proj_id8539191
sraprjna764037
date_of_upload26/10/2025 13:39
doi10.3390/pathogens10101347
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
non-pregnant0.500000
anal swab0.400000
LOWER IN anal swab0.285714
LOWER IN vagina0.200000
young adult stage0.200000
vagina0.111111
female0.024691
control0.008811
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN anal swab1.000000
anal swab0.333333
non-pregnant0.333333
LOWER IN vagina0.250000
young adult stage0.111111
vagina0.062500
female0.012500
control0.004444
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
bologna, italy1.000000
young adult stage1.000000
homo sapiens1.000000
non-pregnant1.000000
female1.000000
anus0.500000
ano-rectal mucosa0.500000
anal swab0.500000
chlamydia0.500000
control0.500000
vaginal swab0.500000
cervicovaginal mucosa0.500000
vagina0.500000
LOWER IN vaginal swab0.166667
LOWER IN cervicovaginal mucosa0.166667
LOWER IN vagina0.166667
LOWER IN anal swab0.166667
LOWER IN anus0.166667
LOWER IN ano-rectal mucosa0.166667
Number of experiments associating the term to the sequence
TermScore
bologna, italy1.000000
anus1.000000
ano-rectal mucosa1.000000
anal swab1.000000
young adult stage1.000000
homo sapiens1.000000
non-pregnant1.000000
female1.000000
chlamydia1.000000
control1.000000
LOWER IN vaginal swab1.000000
LOWER IN cervicovaginal mucosa1.000000
LOWER IN vagina1.000000
vaginal swab1.000000
cervicovaginal mucosa1.000000
vagina1.000000
LOWER IN anal swab1.000000
LOWER IN anus1.000000
LOWER IN ano-rectal mucosa1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1298naCross-site association of Chlamydia status (vaginal-positive vs anal-positive) ( high in vaginal swab cervicovaginal mucosa vagina compared to anal swab anus ano-rectal mucosa in bologna, italy young adult stage homo sapiens non-pregnant female chlamydia )2025-10-26v31 / 1pendingNo
1298naBody site differences in Chlamydia-positive women (anal vs vaginal) ( high in anal swab anus ano-rectal mucosa compared to vaginal swab cervicovaginal mucosa vagina in bologna, italy young adult stage homo sapiens non-pregnant female chlamydia )2025-10-26v31 / 9pendingNo
1298naVaginal swabs from Chlamydia-negative women (dominant bologna, italy, female, cervicovaginal mucosa, control, young adult stage, vaginal swab, homo sapiens, non-pregnant, vagina)2025-10-26v31 / 13pendingNo
1298naVaginal swabs from Chlamydia-positive women (dominant bologna, italy, female, cervicovaginal mucosa, young adult stage, vaginal swab, homo sapiens, non-pregnant, vagina, chlamydia)2025-10-26v31 / 17pendingNo
1298naAnal swabs from Chlamydia-positive women (dominant bologna, italy, anus, ano-rectal mucosa, anal swab, young adult stage, homo sapiens, non-pregnant, female, chlamydia)2025-10-26v31 / 23pendingNo
1298naAnal swabs from Chlamydia-negative women (dominant bologna, italy, anus, ano-rectal mucosa, anal swab, control, young adult stage, homo sapiens, non-pregnant, female)2025-10-26v31 / 25pendingNo
1298naVaginal swabs from Chlamydia-negative women (common bologna, italy, female, cervicovaginal mucosa, control, young adult stage, vaginal swab, homo sapiens, non-pregnant, vagina)2025-10-26v31 / 33pendingNo
1298naVaginal swabs from Chlamydia-positive women (common bologna, italy, female, cervicovaginal mucosa, young adult stage, vaginal swab, homo sapiens, non-pregnant, vagina, chlamydia)2025-10-26v31 / 43pendingNo
1298naBody site differences in Chlamydia-negative women (anal vs vaginal) ( high in anal swab anus ano-rectal mucosa compared to vaginal swab cervicovaginal mucosa vagina in bologna, italy control young adult stage homo sapiens non-pregnant female )2025-10-26v31 / 66pendingNo
1298naBody site differences in Chlamydia-negative women (anal vs vaginal) ( high in vaginal swab cervicovaginal mucosa vagina compared to anal swab anus ano-rectal mucosa in bologna, italy control young adult stage homo sapiens non-pregnant female )2025-10-26v31 / 66pendingNo
1298naAnal swabs from Chlamydia-negative women (common bologna, italy, anus, ano-rectal mucosa, anal swab, control, young adult stage, homo sapiens, non-pregnant, female)2025-10-26v31 / 78pendingNo
1298naAnal swabs from Chlamydia-positive women (common bologna, italy, anus, ano-rectal mucosa, anal swab, young adult stage, homo sapiens, non-pregnant, female, chlamydia)2025-10-26v31 / 105pendingNo

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