Experiment ID: 1273

Field Description
namea modified mediterranean-style diet enhances brain function via specific gut-microbiome-brain mechanisms (10936641) - gpt-5-mini
proj_id10936641
sraprjna1011002
date_of_upload22/10/2025 04:29
doi10.1080/19490976.2024.2323752
modelgpt-5-mini

Annotations for experiment:

term enrichment score
TermScore
alzheimer's disease0.214286
LOWER IN alzheimer's disease0.100000
mus musculus0.027027
female0.024691
control0.008683
LOWER IN control0.008475
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
alzheimer's disease0.250000
LOWER IN alzheimer's disease0.250000
mus musculus0.013699
female0.012500
LOWER IN control0.004545
control0.004444
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
city of philadelphia1.000000
feces1.000000
vivarium1.000000
female1.000000
united states of america1.000000
pre-intervention0.187500
baseline0.187500
wild-type genotype0.187500
control0.187500
alzheimer’s disease0.187500
transgenic0.187500
app/ps1 genotype0.187500
alzheimer's disease0.187500
ad model0.187500
mid-intervention0.125000
late-intervention0.125000
LOWER IN pre-intervention0.062500
LOWER IN baseline0.062500
LOWER IN control0.062500
LOWER IN wild-type genotype0.062500
LOWER IN alzheimer’s disease0.062500
LOWER IN transgenic0.062500
LOWER IN app/ps1 genotype0.062500
LOWER IN alzheimer's disease0.062500
LOWER IN ad model0.062500
Number of experiments associating the term to the sequence
TermScore
pre-intervention1.000000
baseline1.000000
mus musculus1.000000
city of philadelphia1.000000
feces1.000000
vivarium1.000000
female1.000000
united states of america1.000000
LOWER IN pre-intervention1.000000
LOWER IN baseline1.000000
wild-type genotype1.000000
control1.000000
mid-intervention1.000000
alzheimer’s disease1.000000
transgenic1.000000
app/ps1 genotype1.000000
alzheimer's disease1.000000
ad model1.000000
late-intervention1.000000
LOWER IN control1.000000
LOWER IN wild-type genotype1.000000
LOWER IN alzheimer’s disease1.000000
LOWER IN transgenic1.000000
LOWER IN app/ps1 genotype1.000000
LOWER IN alzheimer's disease1.000000
LOWER IN ad model1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1273naGenotype effect on fecal microbiome (APP/PS1 AD model vs wild-type) ( high in control wild-type genotype compared to alzheimer’s disease transgenic app/ps1 genotype alzheimer's disease ad model in mus musculus city of philadelphia feces vivarium female united states of america )2025-10-22v41 / 5pendingNo
1273naGenotype effect on fecal microbiome (APP/PS1 AD model vs wild-type) ( high in alzheimer’s disease transgenic app/ps1 genotype alzheimer's disease ad model compared to control wild-type genotype in mus musculus city of philadelphia feces vivarium female united states of america )2025-10-22v41 / 7pendingNo
1273na4-week fecal samples (mid-intervention) (dominant mus musculus, city of philadelphia, feces, vivarium, female, mid-intervention, united states of america)2025-10-22v41 / 13pendingNo
1273na8-week fecal samples (late-intervention) (dominant mus musculus, city of philadelphia, feces, vivarium, female, united states of america, late-intervention)2025-10-22v41 / 13pendingNo
1273naBaseline (pre-diet) fecal samples (dominant mus musculus, city of philadelphia, feces, vivarium, female, united states of america, pre-intervention, baseline)2025-10-22v41 / 18pendingNo
1273naSamples from APP/PS1 (AD) mice (dominant alzheimer’s disease, mus musculus, transgenic, city of philadelphia, feces, vivarium, female, app/ps1 genotype, alzheimer's disease, united states of america, ad model)2025-10-22v41 / 19pendingNo
1273naSamples from wild-type (WT) mice (dominant mus musculus, city of philadelphia, feces, vivarium, female, wild-type genotype, united states of america, control)2025-10-22v41 / 19pendingNo
1273naAll mouse fecal metagenomes collected in USA: Tallahassee (dominant mus musculus, city of philadelphia, feces, vivarium, female, united states of america)2025-10-22v41 / 19pendingNo
1273na8-week fecal samples (late-intervention) (common mus musculus, city of philadelphia, feces, vivarium, female, united states of america, late-intervention)2025-10-22v41 / 83pendingNo
1273naAll mouse fecal metagenomes collected in USA: Tallahassee (common mus musculus, city of philadelphia, feces, vivarium, female, united states of america)2025-10-22v41 / 88pendingNo
1273naSamples from APP/PS1 (AD) mice (common alzheimer’s disease, mus musculus, transgenic, city of philadelphia, feces, vivarium, female, app/ps1 genotype, alzheimer's disease, united states of america, ad model)2025-10-22v41 / 89pendingNo
1273na4-week fecal samples (mid-intervention) (common mus musculus, city of philadelphia, feces, vivarium, female, mid-intervention, united states of america)2025-10-22v41 / 92pendingNo
1273naSamples from wild-type (WT) mice (common mus musculus, city of philadelphia, feces, vivarium, female, wild-type genotype, united states of america, control)2025-10-22v41 / 98pendingNo
1273naBaseline (pre-diet) fecal samples (common mus musculus, city of philadelphia, feces, vivarium, female, united states of america, pre-intervention, baseline)2025-10-22v41 / 202pendingNo
1273naEffect of intervention over time in mice (baseline vs 4-week vs 8-week) ( high in pre-intervention baseline compared to in mus musculus city of philadelphia feces vivarium female united states of america )2025-10-22v41 / 475pendingNo
1273naEffect of intervention over time in mice (baseline vs 4-week vs 8-week) ( high in compared to pre-intervention baseline in mus musculus city of philadelphia feces vivarium female united states of america )2025-10-22v41 / 475pendingNo

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