Experiment ID: 1273

Field Description
namea modified mediterranean-style diet enhances brain function via specific gut-microbiome-brain mechanisms (10936641) - gpt-5-mini
proj_id10936641
sraprjna1011002
date_of_upload22/10/2025 04:29
doi10.1080/19490976.2024.2323752
modelgpt-5-mini

Annotations for experiment:

term enrichment score
TermScore
alzheimer's disease0.214286
LOWER IN alzheimer's disease0.100000
mus musculus0.027027
female0.024691
control0.008683
LOWER IN control0.008475
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
alzheimer's disease0.250000
LOWER IN alzheimer's disease0.250000
mus musculus0.013699
female0.012500
LOWER IN control0.004545
control0.004444
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
female1.000000
mus musculus1.000000
vivarium1.000000
city of philadelphia1.000000
baseline0.187500
pre-intervention0.187500
control0.187500
wild-type genotype0.187500
transgenic0.187500
alzheimer's disease0.187500
alzheimer’s disease0.187500
app/ps1 genotype0.187500
ad model0.187500
mid-intervention0.125000
late-intervention0.125000
LOWER IN baseline0.062500
LOWER IN pre-intervention0.062500
LOWER IN control0.062500
LOWER IN wild-type genotype0.062500
LOWER IN transgenic0.062500
LOWER IN alzheimer's disease0.062500
LOWER IN alzheimer’s disease0.062500
LOWER IN app/ps1 genotype0.062500
LOWER IN ad model0.062500
Number of experiments associating the term to the sequence
TermScore
baseline1.000000
pre-intervention1.000000
feces1.000000
united states of america1.000000
female1.000000
mus musculus1.000000
vivarium1.000000
city of philadelphia1.000000
LOWER IN baseline1.000000
LOWER IN pre-intervention1.000000
control1.000000
wild-type genotype1.000000
mid-intervention1.000000
transgenic1.000000
alzheimer's disease1.000000
alzheimer’s disease1.000000
app/ps1 genotype1.000000
ad model1.000000
late-intervention1.000000
LOWER IN control1.000000
LOWER IN wild-type genotype1.000000
LOWER IN transgenic1.000000
LOWER IN alzheimer's disease1.000000
LOWER IN alzheimer’s disease1.000000
LOWER IN app/ps1 genotype1.000000
LOWER IN ad model1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1273naGenotype effect on fecal microbiome (APP/PS1 AD model vs wild-type) ( high in control wild-type genotype compared to transgenic alzheimer's disease alzheimer’s disease app/ps1 genotype ad model in feces united states of america female mus musculus vivarium city of philadelphia )2025-10-22v41 / 5pendingNo
1273naGenotype effect on fecal microbiome (APP/PS1 AD model vs wild-type) ( high in transgenic alzheimer's disease alzheimer’s disease app/ps1 genotype ad model compared to control wild-type genotype in feces united states of america female mus musculus vivarium city of philadelphia )2025-10-22v41 / 7pendingNo
1273na4-week fecal samples (mid-intervention) (dominant feces, united states of america, female, mus musculus, vivarium, city of philadelphia, mid-intervention)2025-10-22v41 / 13pendingNo
1273na8-week fecal samples (late-intervention) (dominant feces, united states of america, female, mus musculus, vivarium, city of philadelphia, late-intervention)2025-10-22v41 / 13pendingNo
1273naBaseline (pre-diet) fecal samples (dominant feces, united states of america, female, mus musculus, vivarium, city of philadelphia, baseline, pre-intervention)2025-10-22v41 / 18pendingNo
1273naSamples from APP/PS1 (AD) mice (dominant feces, united states of america, female, mus musculus, vivarium, transgenic, alzheimer's disease, city of philadelphia, alzheimer’s disease, app/ps1 genotype, ad model)2025-10-22v41 / 19pendingNo
1273naSamples from wild-type (WT) mice (dominant feces, control, united states of america, female, mus musculus, vivarium, city of philadelphia, wild-type genotype)2025-10-22v41 / 19pendingNo
1273naAll mouse fecal metagenomes collected in USA: Tallahassee (dominant feces, united states of america, female, mus musculus, vivarium, city of philadelphia)2025-10-22v41 / 19pendingNo
1273na8-week fecal samples (late-intervention) (common feces, united states of america, female, mus musculus, vivarium, city of philadelphia, late-intervention)2025-10-22v41 / 83pendingNo
1273naAll mouse fecal metagenomes collected in USA: Tallahassee (common feces, united states of america, female, mus musculus, vivarium, city of philadelphia)2025-10-22v41 / 88pendingNo
1273naSamples from APP/PS1 (AD) mice (common feces, united states of america, female, mus musculus, vivarium, transgenic, alzheimer's disease, city of philadelphia, alzheimer’s disease, app/ps1 genotype, ad model)2025-10-22v41 / 89pendingNo
1273na4-week fecal samples (mid-intervention) (common feces, united states of america, female, mus musculus, vivarium, city of philadelphia, mid-intervention)2025-10-22v41 / 92pendingNo
1273naSamples from wild-type (WT) mice (common feces, control, united states of america, female, mus musculus, vivarium, city of philadelphia, wild-type genotype)2025-10-22v41 / 98pendingNo
1273naBaseline (pre-diet) fecal samples (common feces, united states of america, female, mus musculus, vivarium, city of philadelphia, baseline, pre-intervention)2025-10-22v41 / 202pendingNo
1273naEffect of intervention over time in mice (baseline vs 4-week vs 8-week) ( high in baseline pre-intervention compared to in feces united states of america female mus musculus vivarium city of philadelphia )2025-10-22v41 / 475pendingNo
1273naEffect of intervention over time in mice (baseline vs 4-week vs 8-week) ( high in compared to baseline pre-intervention in feces united states of america female mus musculus vivarium city of philadelphia )2025-10-22v41 / 475pendingNo

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