dbBact

This is the development server

Experiment ID: 127

Field	Description
name	development of the chick microbiome: how early exposure influences future microbial diversity
qiita	10291
datamd5	04841746f1554f9ba57e7612f1c0f66c
mapmd5	917d192f5558f2c76ee96966411f9133

Annotations for experiment:

term enrichment score

Term	Score
age 14-28 days	0.400000
LOWER IN vaccination	0.250000
LOWER IN salmune vaccination	0.250000
salmune vaccination	0.250000
vaccination	0.222222
old age	0.153846
LOWER IN young age	0.153846
young age	0.133333
LOWER IN old age	0.133333
chicken	0.090909
gallus gallus	0.086957
age	0.083333
caecum	0.039216
LOWER IN control	0.008850
control	0.008658
united states of america	0.006645

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN vaccination	0.500000
LOWER IN salmune vaccination	0.500000
age 14-28 days	0.500000
salmune vaccination	0.500000
vaccination	0.333333
old age	0.142857
LOWER IN young age	0.142857
young age	0.111111
LOWER IN old age	0.111111
age	0.047619
chicken	0.047619
gallus gallus	0.045455
caecum	0.020000
LOWER IN control	0.004545
control	0.004444
united states of america	0.003333

Fraction of annotations for the query sequences containing the term

Term	Score
united states of america	1.000000
caecum	1.000000
gallus gallus	1.000000
chicken	1.000000
age	0.333333
age 14-28 days	0.333333
old age	0.166667
LOWER IN young age	0.166667
control	0.166667
LOWER IN vaccination	0.166667
LOWER IN salmune vaccination	0.166667
vaccination	0.166667
salmune vaccination	0.166667
LOWER IN control	0.166667
young age	0.166667
LOWER IN old age	0.166667

Number of experiments associating the term to the sequence

Term	Score
age	1.000000
old age	1.000000
LOWER IN young age	1.000000
united states of america	1.000000
caecum	1.000000
gallus gallus	1.000000
chicken	1.000000
control	1.000000
LOWER IN vaccination	1.000000
LOWER IN salmune vaccination	1.000000
age 14-28 days	1.000000
vaccination	1.000000
salmune vaccination	1.000000
LOWER IN control	1.000000
young age	1.000000
LOWER IN old age	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
127	amnon	high in young (0-3 days) compared to old (28 day) chickens ( high in age young age compared to old age in united states of america caecum gallus gallus chicken )	2017-04-14	v4	1 / 3	approved	No
127	amnon	dominant united states of america, caecum, gallus gallus, chicken, age 14-28 days	2017-04-14	v4	1 / 28	approved	No
127	amnon	higher in vaccinated chickens ( high in vaccination salmune vaccination compared to control in united states of america caecum gallus gallus chicken )	2017-04-14	v4	1 / 34	approved	No
127	amnon	common united states of america, caecum, gallus gallus, chicken, age 14-28 days	2017-04-14	v4	1 / 51	approved	No
127	amnon	higher in non-vaccinated chickens ( high in control compared to vaccination salmune vaccination in united states of america caecum gallus gallus chicken )	2017-04-14	v4	1 / 72	approved	No
127	amnon	high in old (14-28 days) compared to young (0-3 day) chickens ( high in age old age compared to young age in united states of america caecum gallus gallus chicken )	2017-04-14	v4	1 / 98	approved	No

Problems / suggestions? Please visit the dbBact forum