Experiment ID: 1259

Field Description
namevaginal and anal microbiome during chlamydia trachomatis infections (8539191) - gpt-5
proj_id8539191
sraprjna764037
date_of_upload22/10/2025 01:47
doi10.3390/pathogens10101347
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
non-pregnant0.500000
anal swab0.375000
LOWER IN anal swab0.250000
young adult stage0.200000
LOWER IN vagina0.181818
vagina0.112676
female0.024691
control0.008811
LOWER IN control0.008547
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN anal swab1.000000
non-pregnant0.333333
anal swab0.333333
LOWER IN vagina0.250000
young adult stage0.111111
vagina0.062500
female0.012500
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
female1.000000
non-pregnant1.000000
bologna, italy1.000000
homo sapiens1.000000
young adult stage1.000000
vaginal swab0.571429
cervicovaginal mucosa0.571429
vagina0.571429
control0.500000
chlamydia0.500000
anus0.428571
ano-rectal mucosa0.428571
anal swab0.428571
LOWER IN anus0.142857
LOWER IN ano-rectal mucosa0.142857
LOWER IN anal swab0.142857
LOWER IN vaginal swab0.142857
LOWER IN cervicovaginal mucosa0.142857
LOWER IN vagina0.142857
LOWER IN control0.071429
LOWER IN chlamydia0.071429
Number of experiments associating the term to the sequence
TermScore
vaginal swab1.000000
cervicovaginal mucosa1.000000
vagina1.000000
LOWER IN anus1.000000
LOWER IN ano-rectal mucosa1.000000
LOWER IN anal swab1.000000
female1.000000
control1.000000
non-pregnant1.000000
bologna, italy1.000000
homo sapiens1.000000
young adult stage1.000000
anus1.000000
ano-rectal mucosa1.000000
anal swab1.000000
LOWER IN vaginal swab1.000000
LOWER IN cervicovaginal mucosa1.000000
LOWER IN vagina1.000000
chlamydia1.000000
LOWER IN control1.000000
LOWER IN chlamydia1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1259naVaginal microbiota: Chlamydia-positive vs negative ( high in chlamydia compared to control in vagina female non-pregnant vaginal swab bologna, italy homo sapiens young adult stage cervicovaginal mucosa )2025-10-22v31 / 2pendingNo
1259naVaginal microbiota: Chlamydia-positive vs negative ( high in control compared to chlamydia in vagina female non-pregnant vaginal swab bologna, italy homo sapiens young adult stage cervicovaginal mucosa )2025-10-22v31 / 2pendingNo
1259naVaginal swabs from Chlamydia-negative women (dominant vagina, female, control, non-pregnant, vaginal swab, bologna, italy, homo sapiens, young adult stage, cervicovaginal mucosa)2025-10-22v31 / 13pendingNo
1259naVaginal swabs from Chlamydia-positive women (dominant chlamydia, vagina, female, non-pregnant, vaginal swab, bologna, italy, homo sapiens, young adult stage, cervicovaginal mucosa)2025-10-22v31 / 17pendingNo
1259naBody site differences in Chlamydia-positive women (anal vs vaginal) ( high in anus ano-rectal mucosa anal swab compared to vaginal swab cervicovaginal mucosa vagina in chlamydia female non-pregnant bologna, italy homo sapiens young adult stage )2025-10-22v31 / 18pendingNo
1259naAnal swabs from Chlamydia-positive women (dominant chlamydia, female, non-pregnant, bologna, italy, homo sapiens, ano-rectal mucosa, anal swab, anus, young adult stage)2025-10-22v31 / 23pendingNo
1259naAnal swabs from Chlamydia-negative women (dominant female, control, non-pregnant, bologna, italy, homo sapiens, ano-rectal mucosa, anal swab, anus, young adult stage)2025-10-22v31 / 25pendingNo
1259naBody site differences in Chlamydia-positive women (anal vs vaginal) ( high in vaginal swab cervicovaginal mucosa vagina compared to anus ano-rectal mucosa anal swab in chlamydia female non-pregnant bologna, italy homo sapiens young adult stage )2025-10-22v31 / 26pendingNo
1259naVaginal swabs from Chlamydia-negative women (common vagina, female, control, non-pregnant, vaginal swab, bologna, italy, homo sapiens, young adult stage, cervicovaginal mucosa)2025-10-22v31 / 33pendingNo
1259naVaginal swabs from Chlamydia-positive women (common chlamydia, vagina, female, non-pregnant, vaginal swab, bologna, italy, homo sapiens, young adult stage, cervicovaginal mucosa)2025-10-22v31 / 43pendingNo
1259naAnal swabs from Chlamydia-negative women (common female, control, non-pregnant, bologna, italy, homo sapiens, ano-rectal mucosa, anal swab, anus, young adult stage)2025-10-22v31 / 78pendingNo
1259naAnal swabs from Chlamydia-positive women (common chlamydia, female, non-pregnant, bologna, italy, homo sapiens, ano-rectal mucosa, anal swab, anus, young adult stage)2025-10-22v31 / 105pendingNo
1259naBody site differences in Chlamydia-negative women (anal vs vaginal) ( high in anus ano-rectal mucosa anal swab compared to vaginal swab cervicovaginal mucosa vagina in female control non-pregnant bologna, italy homo sapiens young adult stage )2025-10-22v31 / 137pendingNo
1259naBody site differences in Chlamydia-negative women (anal vs vaginal) ( high in vaginal swab cervicovaginal mucosa vagina compared to anus ano-rectal mucosa anal swab in female control non-pregnant bologna, italy homo sapiens young adult stage )2025-10-22v31 / 140pendingNo

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