Experiment ID: 1253

Field Description
namegut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease (11650326) - gpt-5
proj_id11650326
sraprjna917086
date_of_upload19/10/2025 15:37
doi10.1016/j.isci.2024.111442
modelgpt-5

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN active disease0.500000
active disease0.500000
LOWER IN left colon0.250000
left colon0.250000
LOWER IN irritable bowel syndrome0.166667
irritable bowel syndrome0.166667
inflammatory bowel disease0.111111
adolescent stage0.076923
LOWER IN ileum0.066667
LOWER IN colon0.055556
south korea0.052632
ileum0.052632
LOWER IN crohn's disease0.050000
LOWER IN ulcerative colitis0.047619
ulcerative colitis0.045455
colon0.043478
crohn's disease0.043478
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
south korea1.000000
adolescent stage1.000000
human gut1.000000
crohn's disease0.400000
ulcerative colitis0.400000
active disease0.366667
clinical remission0.366667
control0.333333
colon0.333333
ileum0.333333
left colon0.333333
LOWER IN active disease0.233333
LOWER IN clinical remission0.233333
LOWER IN control0.200000
irritable bowel syndrome0.166667
LOWER IN colon0.133333
LOWER IN ileum0.133333
LOWER IN left colon0.133333
LOWER IN crohn's disease0.133333
LOWER IN ulcerative colitis0.133333
LOWER IN irritable bowel syndrome0.100000
very high fecal calprotectin0.066667
calprotectin0.066667
inflammatory bowel disease0.066667
anti-tnf therapy0.066667
tumor necrosis factor alpha inhibitor0.066667
Exp. ID User ID Description Date Region Sequences Status Flag
1253naUlcerative colitis (all states) vs FGID controls ( high in left colon ulcerative colitis active disease clinical remission compared to control irritable bowel syndrome in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 2pendingNo
1253naActive IBD (CD-active + UC-active) vs Remission IBD (CD-remission + UC-remission) ( high in active disease compared to clinical remission in feces homo sapiens colon ileum left colon crohn's disease ulcerative colitis south korea adolescent stage human gut )2025-10-19v31 / 3pendingNo
1253naActive IBD (CD-active + UC-active) vs Remission IBD (CD-remission + UC-remission) ( high in clinical remission compared to active disease in feces homo sapiens colon ileum left colon crohn's disease ulcerative colitis south korea adolescent stage human gut )2025-10-19v31 / 3pendingNo
1253naUlcerative colitis (all states) vs FGID controls ( high in control irritable bowel syndrome compared to left colon ulcerative colitis active disease clinical remission in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 14pendingNo
1253naUlcerative colitis (all states) vs Healthy controls ( high in left colon ulcerative colitis active disease clinical remission compared to control in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 15pendingNo
1253naUlcerative colitis - active state (dominant feces, homo sapiens, left colon, ulcerative colitis, south korea, active disease, adolescent stage, human gut)2025-10-19v31 / 16pendingNo
1253naFunctional gastrointestinal disorder (FGID) controls (dominant feces, homo sapiens, control, irritable bowel syndrome, south korea, adolescent stage, human gut)2025-10-19v31 / 18pendingNo
1253naUlcerative colitis (all states) vs Healthy controls ( high in control compared to left colon ulcerative colitis active disease clinical remission in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 18pendingNo
1253naAnti-TNF users (any disease category) (dominant feces, homo sapiens, inflammatory bowel disease, crohn's disease, ulcerative colitis, south korea, adolescent stage, human gut, anti-tnf therapy, tumor necrosis factor alpha inhibitor)2025-10-19v31 / 19pendingNo
1253naHealthy controls (Korean pediatric stool) (dominant feces, homo sapiens, control, south korea, adolescent stage, human gut)2025-10-19v31 / 20pendingNo
1253naUlcerative colitis - remission state (dominant feces, homo sapiens, left colon, ulcerative colitis, south korea, adolescent stage, clinical remission, human gut)2025-10-19v31 / 21pendingNo
1253naCrohn’s disease - remission state (dominant feces, homo sapiens, colon, ileum, crohn's disease, south korea, adolescent stage, clinical remission, human gut)2025-10-19v31 / 24pendingNo
1253naVery high fecal calprotectin (>2000 mg/kg) stool samples (dominant feces, homo sapiens, south korea, adolescent stage, human gut, very high fecal calprotectin, calprotectin)2025-10-19v31 / 26pendingNo
1253naCrohn’s disease - active state (common feces, homo sapiens, colon, ileum, crohn's disease, south korea, active disease, adolescent stage, human gut)2025-10-19v31 / 28pendingNo
1253naCrohn’s disease - active state (dominant feces, homo sapiens, colon, ileum, crohn's disease, south korea, active disease, adolescent stage, human gut)2025-10-19v31 / 28pendingNo
1253naCrohn’s disease - remission state (common feces, homo sapiens, colon, ileum, crohn's disease, south korea, adolescent stage, clinical remission, human gut)2025-10-19v31 / 32pendingNo
1253naUlcerative colitis - active state (common feces, homo sapiens, left colon, ulcerative colitis, south korea, active disease, adolescent stage, human gut)2025-10-19v31 / 33pendingNo
1253naAnti-TNF users (any disease category) (common feces, homo sapiens, inflammatory bowel disease, crohn's disease, ulcerative colitis, south korea, adolescent stage, human gut, anti-tnf therapy, tumor necrosis factor alpha inhibitor)2025-10-19v31 / 36pendingNo
1253naVery high fecal calprotectin (>2000 mg/kg) stool samples (common feces, homo sapiens, south korea, adolescent stage, human gut, very high fecal calprotectin, calprotectin)2025-10-19v31 / 43pendingNo
1253naUlcerative colitis - remission state (common feces, homo sapiens, left colon, ulcerative colitis, south korea, adolescent stage, clinical remission, human gut)2025-10-19v31 / 47pendingNo
1253naFunctional gastrointestinal disorder (FGID) controls (common feces, homo sapiens, control, irritable bowel syndrome, south korea, adolescent stage, human gut)2025-10-19v31 / 51pendingNo
1253naHealthy controls (Korean pediatric stool) (common feces, homo sapiens, control, south korea, adolescent stage, human gut)2025-10-19v31 / 61pendingNo
1253naIBD (CD + UC) vs FGID controls ( high in colon ileum left colon crohn's disease ulcerative colitis active disease clinical remission compared to control irritable bowel syndrome in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 61pendingNo
1253naIBD (CD + UC) vs FGID controls ( high in control irritable bowel syndrome compared to colon ileum left colon crohn's disease ulcerative colitis active disease clinical remission in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 61pendingNo
1253naEach IBD subtype vs FGID controls ( high in control irritable bowel syndrome compared to colon ileum crohn's disease active disease clinical remission in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 67pendingNo
1253naEach IBD subtype vs FGID controls ( high in colon ileum crohn's disease active disease clinical remission compared to control irritable bowel syndrome in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 69pendingNo
1253naEach IBD subtype vs Healthy controls ( high in control compared to colon ileum crohn's disease active disease clinical remission in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 110pendingNo
1253naIBD (CD + UC) vs Healthy controls (Korean pediatric stool) ( high in colon ileum left colon crohn's disease ulcerative colitis active disease clinical remission compared to control in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 113pendingNo
1253naEach IBD subtype vs Healthy controls ( high in colon ileum crohn's disease active disease clinical remission compared to control in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 113pendingNo
1253naIBD (CD + UC) vs Healthy controls (Korean pediatric stool) ( high in control compared to colon ileum left colon crohn's disease ulcerative colitis active disease clinical remission in feces homo sapiens south korea adolescent stage human gut )2025-10-19v31 / 115pendingNo

Problems / suggestions? Please visit the dbBact forum