Experiment ID: 1247

Field Description
nameimpaired gut microbiota-mediated short-chain fatty acid production precedes morbidity and mortality in people with hiv (nihms-1948184) - gpt-5
proj_idnihms-1948184
sraprjna994573
date_of_upload19/10/2025 14:22
doi10.1016/j.celrep.2023.113336
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
antiretroviral therapy0.500000
human aged stage0.400000
human middle aged stage0.363636
LOWER IN antiretroviral therapy0.250000
united kingdom0.117647
colon0.083333
male0.037736
LOWER IN control0.008850
control0.008811
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
antiretroviral therapy0.500000
LOWER IN antiretroviral therapy0.500000
human middle aged stage0.250000
human aged stage0.250000
united kingdom0.062500
colon0.043478
male0.020000
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1247naOlder adult male PWH (age 60–70) stool samples (dominant 60-year-old human stage, 70-year-old human stage, colon, 69-year-old human stage, human house, feces, antiretroviral therapy, 62-year-old human stage, human immunodeficiency virus infection, 67-year-old human stage, 66-year-old human stage, 61-year-old human stage, geographic location, 65-year-old human stage, homo sapiens, 64-year-old human stage, 68-year-old human stage, human aged stage, united kingdom, 63-year-old human stage, male)2025-10-19v41 / 20pendingNo
1247naNormal BMI PWH (BMI 22–26) stool samples (dominant human middle aged stage, human aged stage, antiretroviral therapy, geographic location, united kingdom, homo sapiens, colon, human immunodeficiency virus infection, normal body mass index, human house, feces)2025-10-19v41 / 21pendingNo
1247naPWH (HIV-positive) stool samples (dominant human middle aged stage, human aged stage, antiretroviral therapy, geographic location, united kingdom, homo sapiens, colon, human immunodeficiency virus infection, human house, feces)2025-10-19v41 / 22pendingNo
1247naHIV-negative stool samples (matched cohort subset location) (dominant human middle aged stage, human aged stage, control, geographic location, united kingdom, homo sapiens, colon, human house, feces)2025-10-19v41 / 22pendingNo
1247naOlder adult male HIV-negative (age 60–70) stool samples (dominant 60-year-old human stage, 70-year-old human stage, colon, 69-year-old human stage, human house, feces, 62-year-old human stage, 67-year-old human stage, 66-year-old human stage, 61-year-old human stage, geographic location, 65-year-old human stage, control, homo sapiens, 64-year-old human stage, 68-year-old human stage, human aged stage, united kingdom, 63-year-old human stage, male)2025-10-19v41 / 23pendingNo
1247naNormal BMI HIV-negative (BMI 22–26) stool samples (dominant human middle aged stage, human aged stage, control, geographic location, united kingdom, homo sapiens, colon, normal body mass index, human house, feces)2025-10-19v41 / 23pendingNo
1247naOlder adult males (60–70): PWH vs HIV-negative ( high in control compared to human immunodeficiency virus infection antiretroviral therapy in 60-year-old human stage 70-year-old human stage colon 69-year-old human stage human house feces 62-year-old human stage 67-year-old human stage 66-year-old human stage 61-year-old human stage geographic location 65-year-old human stage homo sapiens 64-year-old human stage 68-year-old human stage human aged stage united kingdom 63-year-old human stage male )2025-10-19v41 / 49pendingNo
1247naOlder adult males (60–70): PWH vs HIV-negative ( high in human immunodeficiency virus infection antiretroviral therapy compared to control in 60-year-old human stage 70-year-old human stage colon 69-year-old human stage human house feces 62-year-old human stage 67-year-old human stage 66-year-old human stage 61-year-old human stage geographic location 65-year-old human stage homo sapiens 64-year-old human stage 68-year-old human stage human aged stage united kingdom 63-year-old human stage male )2025-10-19v41 / 67pendingNo
1247naNormal BMI (22–26): PWH vs HIV-negative ( high in control compared to human immunodeficiency virus infection antiretroviral therapy in human middle aged stage human aged stage geographic location united kingdom homo sapiens colon normal body mass index human house feces )2025-10-19v41 / 70pendingNo
1247naNormal BMI (22–26): PWH vs HIV-negative ( high in human immunodeficiency virus infection antiretroviral therapy compared to control in human middle aged stage human aged stage geographic location united kingdom homo sapiens colon normal body mass index human house feces )2025-10-19v41 / 82pendingNo
1247naNormal BMI PWH (BMI 22–26) stool samples (common human middle aged stage, human aged stage, antiretroviral therapy, geographic location, united kingdom, homo sapiens, colon, human immunodeficiency virus infection, normal body mass index, human house, feces)2025-10-19v41 / 94pendingNo
1247naPWH (HIV-positive) stool samples (common human middle aged stage, human aged stage, antiretroviral therapy, geographic location, united kingdom, homo sapiens, colon, human immunodeficiency virus infection, human house, feces)2025-10-19v41 / 95pendingNo
1247naOlder adult male PWH (age 60–70) stool samples (common 60-year-old human stage, 70-year-old human stage, colon, 69-year-old human stage, human house, feces, antiretroviral therapy, 62-year-old human stage, human immunodeficiency virus infection, 67-year-old human stage, 66-year-old human stage, 61-year-old human stage, geographic location, 65-year-old human stage, homo sapiens, 64-year-old human stage, 68-year-old human stage, human aged stage, united kingdom, 63-year-old human stage, male)2025-10-19v41 / 103pendingNo
1247naOlder adult male HIV-negative (age 60–70) stool samples (common 60-year-old human stage, 70-year-old human stage, colon, 69-year-old human stage, human house, feces, 62-year-old human stage, 67-year-old human stage, 66-year-old human stage, 61-year-old human stage, geographic location, 65-year-old human stage, control, homo sapiens, 64-year-old human stage, 68-year-old human stage, human aged stage, united kingdom, 63-year-old human stage, male)2025-10-19v41 / 148pendingNo
1247naHIV-negative stool samples (matched cohort subset location) (common human middle aged stage, human aged stage, control, geographic location, united kingdom, homo sapiens, colon, human house, feces)2025-10-19v41 / 149pendingNo
1247naNormal BMI HIV-negative (BMI 22–26) stool samples (common human middle aged stage, human aged stage, control, geographic location, united kingdom, homo sapiens, colon, normal body mass index, human house, feces)2025-10-19v41 / 150pendingNo
1247naPWH vs HIV-negative (Amsterdam, stool; overall cohort) ( high in control compared to human immunodeficiency virus infection antiretroviral therapy in human middle aged stage human aged stage geographic location united kingdom homo sapiens colon human house feces )2025-10-19v41 / 219pendingNo
1247naPWH vs HIV-negative (Amsterdam, stool; overall cohort) ( high in human immunodeficiency virus infection antiretroviral therapy compared to control in human middle aged stage human aged stage geographic location united kingdom homo sapiens colon human house feces )2025-10-19v41 / 226pendingNo

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