Experiment ID: 1247

Field Description
nameimpaired gut microbiota-mediated short-chain fatty acid production precedes morbidity and mortality in people with hiv (nihms-1948184) - gpt-5
proj_idnihms-1948184
sraprjna994573
date_of_upload19/10/2025 14:22
doi10.1016/j.celrep.2023.113336
modelgpt-5

Annotations for experiment:

term enrichment score
TermScore
antiretroviral therapy0.500000
human aged stage0.400000
human middle aged stage0.363636
LOWER IN antiretroviral therapy0.250000
united kingdom0.117647
colon0.083333
male0.037736
LOWER IN control0.008850
control0.008811
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
antiretroviral therapy0.500000
LOWER IN antiretroviral therapy0.500000
human middle aged stage0.250000
human aged stage0.250000
united kingdom0.062500
colon0.043478
male0.020000
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1247naOlder adult male PWH (age 60–70) stool samples (dominant feces, homo sapiens, human house, geographic location, united kingdom, male, colon, antiretroviral therapy, human aged stage, 60-year-old human stage, 61-year-old human stage, 62-year-old human stage, 63-year-old human stage, 64-year-old human stage, 65-year-old human stage, 66-year-old human stage, 67-year-old human stage, 68-year-old human stage, 69-year-old human stage, 70-year-old human stage, human immunodeficiency virus infection)2025-10-19v41 / 20pendingNo
1247naNormal BMI PWH (BMI 22–26) stool samples (dominant feces, homo sapiens, colon, human house, geographic location, united kingdom, antiretroviral therapy, human middle aged stage, human aged stage, human immunodeficiency virus infection, normal body mass index)2025-10-19v41 / 21pendingNo
1247naPWH (HIV-positive) stool samples (dominant feces, homo sapiens, colon, human house, geographic location, united kingdom, antiretroviral therapy, human middle aged stage, human aged stage, human immunodeficiency virus infection)2025-10-19v41 / 22pendingNo
1247naHIV-negative stool samples (matched cohort subset location) (dominant feces, homo sapiens, control, colon, human house, geographic location, united kingdom, human middle aged stage, human aged stage)2025-10-19v41 / 22pendingNo
1247naOlder adult male HIV-negative (age 60–70) stool samples (dominant feces, homo sapiens, control, human house, geographic location, united kingdom, male, colon, human aged stage, 60-year-old human stage, 61-year-old human stage, 62-year-old human stage, 63-year-old human stage, 64-year-old human stage, 65-year-old human stage, 66-year-old human stage, 67-year-old human stage, 68-year-old human stage, 69-year-old human stage, 70-year-old human stage)2025-10-19v41 / 23pendingNo
1247naNormal BMI HIV-negative (BMI 22–26) stool samples (dominant feces, homo sapiens, control, colon, human house, geographic location, united kingdom, human middle aged stage, human aged stage, normal body mass index)2025-10-19v41 / 23pendingNo
1247naOlder adult males (60–70): PWH vs HIV-negative ( high in control compared to antiretroviral therapy human immunodeficiency virus infection in feces homo sapiens human house geographic location united kingdom male colon human aged stage 60-year-old human stage 61-year-old human stage 62-year-old human stage 63-year-old human stage 64-year-old human stage 65-year-old human stage 66-year-old human stage 67-year-old human stage 68-year-old human stage 69-year-old human stage 70-year-old human stage )2025-10-19v41 / 49pendingNo
1247naOlder adult males (60–70): PWH vs HIV-negative ( high in antiretroviral therapy human immunodeficiency virus infection compared to control in feces homo sapiens human house geographic location united kingdom male colon human aged stage 60-year-old human stage 61-year-old human stage 62-year-old human stage 63-year-old human stage 64-year-old human stage 65-year-old human stage 66-year-old human stage 67-year-old human stage 68-year-old human stage 69-year-old human stage 70-year-old human stage )2025-10-19v41 / 67pendingNo
1247naNormal BMI (22–26): PWH vs HIV-negative ( high in control compared to antiretroviral therapy human immunodeficiency virus infection in feces homo sapiens colon human house geographic location united kingdom human middle aged stage human aged stage normal body mass index )2025-10-19v41 / 70pendingNo
1247naNormal BMI (22–26): PWH vs HIV-negative ( high in antiretroviral therapy human immunodeficiency virus infection compared to control in feces homo sapiens colon human house geographic location united kingdom human middle aged stage human aged stage normal body mass index )2025-10-19v41 / 82pendingNo
1247naNormal BMI PWH (BMI 22–26) stool samples (common feces, homo sapiens, colon, human house, geographic location, united kingdom, antiretroviral therapy, human middle aged stage, human aged stage, human immunodeficiency virus infection, normal body mass index)2025-10-19v41 / 94pendingNo
1247naPWH (HIV-positive) stool samples (common feces, homo sapiens, colon, human house, geographic location, united kingdom, antiretroviral therapy, human middle aged stage, human aged stage, human immunodeficiency virus infection)2025-10-19v41 / 95pendingNo
1247naOlder adult male PWH (age 60–70) stool samples (common feces, homo sapiens, human house, geographic location, united kingdom, male, colon, antiretroviral therapy, human aged stage, 60-year-old human stage, 61-year-old human stage, 62-year-old human stage, 63-year-old human stage, 64-year-old human stage, 65-year-old human stage, 66-year-old human stage, 67-year-old human stage, 68-year-old human stage, 69-year-old human stage, 70-year-old human stage, human immunodeficiency virus infection)2025-10-19v41 / 103pendingNo
1247naOlder adult male HIV-negative (age 60–70) stool samples (common feces, homo sapiens, control, human house, geographic location, united kingdom, male, colon, human aged stage, 60-year-old human stage, 61-year-old human stage, 62-year-old human stage, 63-year-old human stage, 64-year-old human stage, 65-year-old human stage, 66-year-old human stage, 67-year-old human stage, 68-year-old human stage, 69-year-old human stage, 70-year-old human stage)2025-10-19v41 / 148pendingNo
1247naHIV-negative stool samples (matched cohort subset location) (common feces, homo sapiens, control, colon, human house, geographic location, united kingdom, human middle aged stage, human aged stage)2025-10-19v41 / 149pendingNo
1247naNormal BMI HIV-negative (BMI 22–26) stool samples (common feces, homo sapiens, control, colon, human house, geographic location, united kingdom, human middle aged stage, human aged stage, normal body mass index)2025-10-19v41 / 150pendingNo
1247naPWH vs HIV-negative (Amsterdam, stool; overall cohort) ( high in control compared to antiretroviral therapy human immunodeficiency virus infection in feces homo sapiens colon human house geographic location united kingdom human middle aged stage human aged stage )2025-10-19v41 / 219pendingNo
1247naPWH vs HIV-negative (Amsterdam, stool; overall cohort) ( high in antiretroviral therapy human immunodeficiency virus infection compared to control in feces homo sapiens colon human house geographic location united kingdom human middle aged stage human aged stage )2025-10-19v41 / 226pendingNo

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