Experiment ID: 1235

Field Description
namebifidobacteria or fiber protect against diet-induced microbiota-mediated colonic mucus deterioration (5764785) - gpt-5-mini
proj_id5764785
sraprjeb20367
date_of_upload15/10/2025 21:17
doi10.1016/j.chom.2017.11.004
modelgpt-5-mini

Annotations for experiment:

term enrichment score
TermScore
luminal content0.625000
colonic mucosa0.200000
LOWER IN luminal content0.142857
LOWER IN colonic mucosa0.133333
male0.039216
mus musculus0.027027
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
luminal content0.500000
LOWER IN luminal content0.500000
LOWER IN colonic mucosa0.333333
colonic mucosa0.250000
male0.020000
mus musculus0.013699
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1235naDistal colon mucosa-associated samples (combined diets) (dominant distal colon mucosa, mucosa-associated, distal colon, chow diet, colonic mucosa, western style diet, male, specific pathogen free, feces, mus musculus)2025-10-15v41 / 12pendingNo
1235naWestern diet (WD) distal colon content — long-term WSD (WD group) (dominant distal colon, western style diet, luminal content, high-fat diet, male, low-fiber diet, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 15pendingNo
1235naChow-fed distal colon content (luminal) samples (dominant distal colon, chow diet, luminal content, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 16pendingNo
1235naMicrobiota transplant: recipients receiving WSD microbiota (WSD->WSD) — distal colon content (dominant distal colon, microbiota transplantation, western style diet, luminal content, received wsd microbiota, antibiotic pretreatment, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 16pendingNo
1235naTimecourse WSD — later timepoints (14–28 days) distal colon content (dominant distal colon, western style diet, luminal content, timecourse 14-28 days, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 17pendingNo
1235naTimecourse WSD — early timepoints (0–7 days) distal colon content (dominant distal colon, western style diet, timecourse 0-7 days, luminal content, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 18pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) — distal colon content (dominant distal colon, microbiota transplantation, western style diet, luminal content, antibiotic pretreatment, male, received chow microbiota, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 20pendingNo
1235naDistal colon mucosa-associated community vs luminal content (combined diets) ( high in colonic mucosa distal colon mucosa mucosa-associated western style diet compared to luminal content distal colon lumen in distal colon chow diet male specific pathogen free mus musculus feces )2025-10-15v41 / 28pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) vs recipients receiving WSD microbiota (WSD->WSD) — distal colon content ( high in received wsd microbiota compared to received chow microbiota in distal colon microbiota transplantation western style diet luminal content antibiotic pretreatment male specific pathogen free feces distal colon lumen mus musculus )2025-10-15v41 / 33pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) vs recipients receiving WSD microbiota (WSD->WSD) — distal colon content ( high in received chow microbiota compared to received wsd microbiota in distal colon microbiota transplantation western style diet luminal content antibiotic pretreatment male specific pathogen free feces distal colon lumen mus musculus )2025-10-15v41 / 34pendingNo
1235naDistal colon mucosa-associated community vs luminal content (combined diets) ( high in luminal content distal colon lumen compared to colonic mucosa distal colon mucosa mucosa-associated western style diet in distal colon chow diet male specific pathogen free mus musculus feces )2025-10-15v41 / 37pendingNo
1235naWestern diet (WD) distal colon content — long-term WSD (WD group) (common distal colon, western style diet, luminal content, high-fat diet, male, low-fiber diet, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 175pendingNo
1235naMicrobiota transplant: recipients receiving WSD microbiota (WSD->WSD) — distal colon content (common distal colon, microbiota transplantation, western style diet, luminal content, received wsd microbiota, antibiotic pretreatment, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 188pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) — distal colon content (common distal colon, microbiota transplantation, western style diet, luminal content, antibiotic pretreatment, male, received chow microbiota, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 195pendingNo
1235naTimecourse WSD — early timepoints (0–7 days) distal colon content (common distal colon, western style diet, timecourse 0-7 days, luminal content, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 228pendingNo
1235naTimecourse WSD — later timepoints (14–28 days) distal colon content (common distal colon, western style diet, luminal content, timecourse 14-28 days, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 228pendingNo
1235naDistal colon mucosa-associated samples (combined diets) (common distal colon mucosa, mucosa-associated, distal colon, chow diet, colonic mucosa, western style diet, male, specific pathogen free, feces, mus musculus)2025-10-15v41 / 233pendingNo
1235naChow-fed distal colon content (luminal) samples (common distal colon, chow diet, luminal content, male, specific pathogen free, feces, distal colon lumen, mus musculus)2025-10-15v41 / 298pendingNo
1235naDistal colon mucosa-associated community vs luminal content under WD (long-term) ( high in chow diet colonic mucosa distal colon mucosa mucosa-associated compared to low-fiber diet luminal content distal colon lumen high-fat diet in distal colon western style diet male specific pathogen free mus musculus feces )2025-10-15v41 / 304pendingNo
1235naDistal colon mucosa-associated community vs luminal content under WD (long-term) ( high in low-fiber diet luminal content distal colon lumen high-fat diet compared to chow diet colonic mucosa distal colon mucosa mucosa-associated in distal colon western style diet male specific pathogen free mus musculus feces )2025-10-15v41 / 313pendingNo
1235naEffect of long-term WD vs early WD exposure (acute changes) in distal colon content ( high in timecourse 0-7 days compared to low-fiber diet high-fat diet in distal colon western style diet luminal content male specific pathogen free distal colon lumen feces mus musculus )2025-10-15v41 / 329pendingNo
1235naEffect of long-term WD vs early WD exposure (acute changes) in distal colon content ( high in low-fiber diet high-fat diet compared to timecourse 0-7 days in distal colon western style diet luminal content male specific pathogen free distal colon lumen feces mus musculus )2025-10-15v41 / 332pendingNo
1235naLong-term Western diet (WD) vs Chow in distal colon luminal content ( high in chow diet compared to low-fiber diet western style diet high-fat diet in distal colon luminal content male specific pathogen free distal colon lumen feces mus musculus )2025-10-15v41 / 388pendingNo
1235naLong-term Western diet (WD) vs Chow in distal colon luminal content ( high in low-fiber diet western style diet high-fat diet compared to chow diet in distal colon luminal content male specific pathogen free distal colon lumen feces mus musculus )2025-10-15v41 / 405pendingNo

Problems / suggestions? Please visit the dbBact forum