Experiment ID: 1235

Field Description
namebifidobacteria or fiber protect against diet-induced microbiota-mediated colonic mucus deterioration (5764785) - gpt-5-mini
proj_id5764785
sraprjeb20367
date_of_upload15/10/2025 21:17
doi10.1016/j.chom.2017.11.004
modelgpt-5-mini

Annotations for experiment:

term enrichment score
TermScore
luminal content0.625000
colonic mucosa0.200000
LOWER IN luminal content0.142857
LOWER IN colonic mucosa0.133333
male0.039216
mus musculus0.027027
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
luminal content0.500000
LOWER IN luminal content0.500000
LOWER IN colonic mucosa0.333333
colonic mucosa0.250000
male0.020000
mus musculus0.013699
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1235naDistal colon mucosa-associated samples (combined diets) (dominant feces, colonic mucosa, mus musculus, male, distal colon, chow diet, specific pathogen free, western style diet, distal colon mucosa, mucosa-associated)2025-10-15v41 / 12pendingNo
1235naWestern diet (WD) distal colon content — long-term WSD (WD group) (dominant feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, high-fat diet, low-fiber diet)2025-10-15v41 / 15pendingNo
1235naChow-fed distal colon content (luminal) samples (dominant feces, mus musculus, luminal content, male, distal colon, chow diet, specific pathogen free, distal colon lumen)2025-10-15v41 / 16pendingNo
1235naMicrobiota transplant: recipients receiving WSD microbiota (WSD->WSD) — distal colon content (dominant feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, microbiota transplantation, antibiotic pretreatment, received wsd microbiota)2025-10-15v41 / 16pendingNo
1235naTimecourse WSD — later timepoints (14–28 days) distal colon content (dominant feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, timecourse 14-28 days)2025-10-15v41 / 17pendingNo
1235naTimecourse WSD — early timepoints (0–7 days) distal colon content (dominant feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, timecourse 0-7 days)2025-10-15v41 / 18pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) — distal colon content (dominant feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, microbiota transplantation, antibiotic pretreatment, received chow microbiota)2025-10-15v41 / 20pendingNo
1235naDistal colon mucosa-associated community vs luminal content (combined diets) ( high in colonic mucosa western style diet distal colon mucosa mucosa-associated compared to luminal content distal colon lumen in feces mus musculus male distal colon chow diet specific pathogen free )2025-10-15v41 / 28pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) vs recipients receiving WSD microbiota (WSD->WSD) — distal colon content ( high in received wsd microbiota compared to received chow microbiota in feces mus musculus luminal content male distal colon specific pathogen free distal colon lumen western style diet microbiota transplantation antibiotic pretreatment )2025-10-15v41 / 33pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) vs recipients receiving WSD microbiota (WSD->WSD) — distal colon content ( high in received chow microbiota compared to received wsd microbiota in feces mus musculus luminal content male distal colon specific pathogen free distal colon lumen western style diet microbiota transplantation antibiotic pretreatment )2025-10-15v41 / 34pendingNo
1235naDistal colon mucosa-associated community vs luminal content (combined diets) ( high in luminal content distal colon lumen compared to colonic mucosa western style diet distal colon mucosa mucosa-associated in feces mus musculus male distal colon chow diet specific pathogen free )2025-10-15v41 / 37pendingNo
1235naWestern diet (WD) distal colon content — long-term WSD (WD group) (common feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, high-fat diet, low-fiber diet)2025-10-15v41 / 175pendingNo
1235naMicrobiota transplant: recipients receiving WSD microbiota (WSD->WSD) — distal colon content (common feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, microbiota transplantation, antibiotic pretreatment, received wsd microbiota)2025-10-15v41 / 188pendingNo
1235naMicrobiota transplant: recipients receiving chow microbiota (WSD->Chow) — distal colon content (common feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, microbiota transplantation, antibiotic pretreatment, received chow microbiota)2025-10-15v41 / 195pendingNo
1235naTimecourse WSD — early timepoints (0–7 days) distal colon content (common feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, timecourse 0-7 days)2025-10-15v41 / 228pendingNo
1235naTimecourse WSD — later timepoints (14–28 days) distal colon content (common feces, mus musculus, luminal content, male, distal colon, specific pathogen free, distal colon lumen, western style diet, timecourse 14-28 days)2025-10-15v41 / 228pendingNo
1235naDistal colon mucosa-associated samples (combined diets) (common feces, colonic mucosa, mus musculus, male, distal colon, chow diet, specific pathogen free, western style diet, distal colon mucosa, mucosa-associated)2025-10-15v41 / 233pendingNo
1235naChow-fed distal colon content (luminal) samples (common feces, mus musculus, luminal content, male, distal colon, chow diet, specific pathogen free, distal colon lumen)2025-10-15v41 / 298pendingNo
1235naDistal colon mucosa-associated community vs luminal content under WD (long-term) ( high in colonic mucosa chow diet distal colon mucosa mucosa-associated compared to luminal content distal colon lumen high-fat diet low-fiber diet in feces mus musculus male distal colon specific pathogen free western style diet )2025-10-15v41 / 304pendingNo
1235naDistal colon mucosa-associated community vs luminal content under WD (long-term) ( high in luminal content distal colon lumen high-fat diet low-fiber diet compared to colonic mucosa chow diet distal colon mucosa mucosa-associated in feces mus musculus male distal colon specific pathogen free western style diet )2025-10-15v41 / 313pendingNo
1235naEffect of long-term WD vs early WD exposure (acute changes) in distal colon content ( high in timecourse 0-7 days compared to high-fat diet low-fiber diet in feces mus musculus luminal content male distal colon specific pathogen free distal colon lumen western style diet )2025-10-15v41 / 329pendingNo
1235naEffect of long-term WD vs early WD exposure (acute changes) in distal colon content ( high in high-fat diet low-fiber diet compared to timecourse 0-7 days in feces mus musculus luminal content male distal colon specific pathogen free distal colon lumen western style diet )2025-10-15v41 / 332pendingNo
1235naLong-term Western diet (WD) vs Chow in distal colon luminal content ( high in chow diet compared to western style diet high-fat diet low-fiber diet in feces mus musculus luminal content male distal colon specific pathogen free distal colon lumen )2025-10-15v41 / 388pendingNo
1235naLong-term Western diet (WD) vs Chow in distal colon luminal content ( high in western style diet high-fat diet low-fiber diet compared to chow diet in feces mus musculus luminal content male distal colon specific pathogen free distal colon lumen )2025-10-15v41 / 405pendingNo

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