Experiment ID: 1234

Field Description
namethe shared microbiota of humans and companion animals as evaluated from staphylococcus carriage sites (4335418) - gpt-5-mini
proj_id4335418
srasrp042152
date_of_upload15/10/2025 21:15
doi10.1186/s40168-014-0052-7
modelgpt-5-mini

Annotations for experiment:

term enrichment score
TermScore
nose0.500000
skin of body0.254545
LOWER IN felis catus0.190476
LOWER IN homo sapiens0.150000
LOWER IN human adult stage0.139535
LOWER IN canis lupus familiaris0.137931
felis catus0.123077
mouth0.065217
LOWER IN skin of body0.057143
LOWER IN nose0.057143
canis lupus familiaris0.048485
human adult stage0.044653
control0.008463
LOWER IN control0.007874
united states of america0.006645
homo sapiens0.005157
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN skin of body1.000000
LOWER IN nose1.000000
LOWER IN felis catus0.500000
nose0.500000
LOWER IN homo sapiens0.500000
LOWER IN human adult stage0.333333
skin of body0.333333
LOWER IN canis lupus familiaris0.166667
felis catus0.083333
mouth0.040000
canis lupus familiaris0.027027
human adult stage0.023256
LOWER IN control0.004545
control0.004444
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
philadelphia county1.000000
philadelphia1.000000
homo sapiens0.558824
human adult stage0.558824
nose0.500000
felis catus0.235294
canis lupus familiaris0.235294
skin of body0.205882
mouth0.176471
household0.176471
axilla skin0.147059
LOWER IN canis lupus familiaris0.117647
LOWER IN felis catus0.117647
LOWER IN homo sapiens0.088235
LOWER IN human adult stage0.088235
control0.088235
pet-owning household0.088235
pets in house0.088235
mrsa carriage0.058824
asymptomatic carriage0.058824
mrsa infection0.058824
healing lesion0.058824
skin and soft tissue infection0.058824
lesion0.058824
index subject0.058824
LOWER IN pet-owning household0.029412
LOWER IN pets in house0.029412
LOWER IN control0.029412
LOWER IN skin of body0.029412
LOWER IN axilla skin0.029412
LOWER IN nose0.029412
Number of experiments associating the term to the sequence
TermScore
felis catus1.000000
LOWER IN canis lupus familiaris1.000000
united states of america1.000000
mouth1.000000
philadelphia county1.000000
philadelphia1.000000
canis lupus familiaris1.000000
LOWER IN felis catus1.000000
nose1.000000
LOWER IN homo sapiens1.000000
LOWER IN human adult stage1.000000
homo sapiens1.000000
human adult stage1.000000
skin of body1.000000
axilla skin1.000000
mrsa carriage1.000000
asymptomatic carriage1.000000
control1.000000
LOWER IN pet-owning household1.000000
LOWER IN pets in house1.000000
household1.000000
pet-owning household1.000000
pets in house1.000000
LOWER IN control1.000000
mrsa infection1.000000
healing lesion1.000000
skin and soft tissue infection1.000000
lesion1.000000
index subject1.000000
LOWER IN skin of body1.000000
LOWER IN axilla skin1.000000
LOWER IN nose1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1234naHuman inguinal/axilla (skin) samples (dominant homo sapiens, united states of america, skin of body, axilla skin, philadelphia county, philadelphia, human adult stage)2025-10-15v41 / 7pendingNo
1234naHuman nares vs Human inguinal/axilla (skin) — within-human site-specific comparison (nose vs skin) ( high in skin of body axilla skin compared to nose in homo sapiens united states of america philadelphia county philadelphia human adult stage )2025-10-15v41 / 8pendingNo
1234naHuman nares vs Human inguinal/axilla (skin) — within-human site-specific comparison (nose vs skin) ( high in nose compared to skin of body axilla skin in homo sapiens united states of america philadelphia county philadelphia human adult stage )2025-10-15v41 / 9pendingNo
1234naDog nares samples (dominant united states of america, canis lupus familiaris, nose, philadelphia county, philadelphia)2025-10-15v41 / 11pendingNo
1234naCat nares samples (dominant united states of america, felis catus, nose, philadelphia county, philadelphia)2025-10-15v41 / 11pendingNo
1234naHuman nares samples (dominant homo sapiens, united states of america, nose, philadelphia county, philadelphia, human adult stage)2025-10-15v41 / 12pendingNo
1234naHouseholds with pets (human samples from pet-owning households) (dominant homo sapiens, united states of america, philadelphia county, philadelphia, human adult stage, pet-owning household, pets in house, household)2025-10-15v41 / 14pendingNo
1234naHumans with cultured MRSA carriage (carriers) (dominant homo sapiens, united states of america, nose, skin of body, axilla skin, philadelphia county, philadelphia, human adult stage, mrsa carriage, asymptomatic carriage)2025-10-15v41 / 15pendingNo
1234naHouseholds with pets (human samples from pet-owning households) (common homo sapiens, united states of america, philadelphia county, philadelphia, human adult stage, pet-owning household, pets in house, household)2025-10-15v41 / 15pendingNo
1234naHumans in households without pets (dominant homo sapiens, control, united states of america, philadelphia county, philadelphia, human adult stage, household)2025-10-15v41 / 15pendingNo
1234naHuman lesion samples (healing MRSA SSTI lesions) (dominant homo sapiens, united states of america, skin of body, philadelphia county, philadelphia, human adult stage, mrsa infection, healing lesion, skin and soft tissue infection, lesion, index subject)2025-10-15v41 / 16pendingNo
1234naDog nares samples (common united states of america, canis lupus familiaris, nose, philadelphia county, philadelphia)2025-10-15v41 / 17pendingNo
1234naCat oral cavity (mouth) samples (dominant united states of america, felis catus, mouth, philadelphia county, philadelphia)2025-10-15v41 / 19pendingNo
1234naDog oral cavity (mouth) samples (dominant united states of america, canis lupus familiaris, mouth, philadelphia county, philadelphia)2025-10-15v41 / 20pendingNo
1234naHuman inguinal/axilla (skin) samples (common homo sapiens, united states of america, skin of body, axilla skin, philadelphia county, philadelphia, human adult stage)2025-10-15v41 / 27pendingNo
1234naHuman lesion samples (healing MRSA SSTI lesions) (common homo sapiens, united states of america, skin of body, philadelphia county, philadelphia, human adult stage, mrsa infection, healing lesion, skin and soft tissue infection, lesion, index subject)2025-10-15v41 / 37pendingNo
1234naHuman nares samples (common homo sapiens, united states of america, nose, philadelphia county, philadelphia, human adult stage)2025-10-15v41 / 40pendingNo
1234naHumans in households without pets (common homo sapiens, control, united states of america, philadelphia county, philadelphia, human adult stage, household)2025-10-15v41 / 56pendingNo
1234naHumans in pet-owning households vs humans in households without pets — effect of pet ownership on human microbiota ( high in pet-owning household pets in house compared to control in homo sapiens united states of america philadelphia county philadelphia human adult stage household )2025-10-15v41 / 57pendingNo
1234naHumans in pet-owning households vs humans in households without pets — effect of pet ownership on human microbiota ( high in control compared to pet-owning household pets in house in homo sapiens united states of america philadelphia county philadelphia human adult stage household )2025-10-15v41 / 58pendingNo
1234naDog oral cavity (mouth) samples (common united states of america, canis lupus familiaris, mouth, philadelphia county, philadelphia)2025-10-15v41 / 75pendingNo
1234naPet vs human nares — pooled pet nasal microbiota (dog + cat) compared to human nasal microbiota ( high in canis lupus familiaris felis catus compared to homo sapiens human adult stage in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 84pendingNo
1234naPet vs human nares — pooled pet nasal microbiota (dog + cat) compared to human nasal microbiota ( high in homo sapiens human adult stage compared to canis lupus familiaris felis catus in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 84pendingNo
1234naHuman nares vs Dog nares — cross-species comparison of nasal microbiota ( high in homo sapiens human adult stage compared to canis lupus familiaris in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 109pendingNo
1234naHumans with cultured MRSA carriage (carriers) (common homo sapiens, united states of america, nose, skin of body, axilla skin, philadelphia county, philadelphia, human adult stage, mrsa carriage, asymptomatic carriage)2025-10-15v41 / 116pendingNo
1234naCat nares samples (common united states of america, felis catus, nose, philadelphia county, philadelphia)2025-10-15v41 / 125pendingNo
1234naCat oral cavity (mouth) samples (common united states of america, felis catus, mouth, philadelphia county, philadelphia)2025-10-15v41 / 130pendingNo
1234naDog nares vs Cat nares — pet species nasal microbiota comparison ( high in canis lupus familiaris compared to felis catus in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 131pendingNo
1234naHuman nares vs Dog nares — cross-species comparison of nasal microbiota ( high in canis lupus familiaris compared to homo sapiens human adult stage in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 133pendingNo
1234naHuman nares vs Cat nares — cross-species comparison of nasal microbiota ( high in homo sapiens human adult stage compared to felis catus in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 137pendingNo
1234naHuman nares vs Cat nares — cross-species comparison of nasal microbiota ( high in felis catus compared to homo sapiens human adult stage in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 138pendingNo
1234naDog nares vs Cat nares — pet species nasal microbiota comparison ( high in felis catus compared to canis lupus familiaris in united states of america nose philadelphia county philadelphia )2025-10-15v41 / 144pendingNo
1234naDog oral cavity vs Cat oral cavity — pet oral microbiota comparison ( high in canis lupus familiaris compared to felis catus in united states of america mouth philadelphia county philadelphia )2025-10-15v41 / 272pendingNo
1234naDog oral cavity vs Cat oral cavity — pet oral microbiota comparison ( high in felis catus compared to canis lupus familiaris in united states of america mouth philadelphia county philadelphia )2025-10-15v41 / 274pendingNo

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